We use cookies to ensure you get the best experience on our website
Startsida Utforska Hjälp News
Registrera dig Logga in
dervinism
/
convert2nwbEcephysMatNnx
1
0
Fork 0
Filer Ärenden 0 Pull-förfrågningar 0 Wiki

Ingen beskrivning

Träd: 97a1b796dc
Grenar Taggar
convert2nwbE...
dervinism 97a1b796dc Fixed waveformsMean empty array bug 2 år sedan
nnx_derived_data 90ee60d999 Initial commit 2 år sedan
nnx_raw_derived_data 90ee60d999 Initial commit 2 år sedan
LICENSE 243f00fd1b Initial commit 2 år sedan
README.md d82cf1c150 Updated README file 2 år sedan
cleanUp.m 243f00fd1b Initial commit 2 år sedan
concatenateMat.m 243f00fd1b Initial commit 2 år sedan
convert2nwb.m 97a1b796dc Fixed waveformsMean empty array bug 2 år sedan
nwbAnimalParams.m 97a1b796dc Fixed waveformsMean empty array bug 2 år sedan
nwbParams.m 97a1b796dc Fixed waveformsMean empty array bug 2 år sedan
nwbSessionParams.m 97a1b796dc Fixed waveformsMean empty array bug 2 år sedan

README.md

convert2nwbMatNnx

Matlab functions to convert extracellular electrophysiology recordings and associated behavioural data to Neurodata Without Borders (NWB) file format: Neuronexus example.

In order to download this repository, you will have to install GIN client. You can find the installation instructions here.

To download the repository execute the following lines in your command line:

gin get dervinism/convert2nwbMatNnx
cd convert2nwbMatNnx
gin get-content

In order to execute the Matlab code, you will also need to download the matnwb repository and add it to your Matlab path.

Once you have downloaded and installed all the required dependencies you can execute convert2nwb script in Matlab. This should convert the example data into NWB format and store it inside the nnx_derived_data_nwb folder. If you want to adapt the code for your own puprposes, have a look at the code and the comments inside Matlab scritps and functions.

Keywords: Neurodata Without Borders; NWB; matnwb; extracellular electrophysiology; ecephys; Neuronexus; silicone probe; extracellular electrode; spiking; FAIR principles; open science.