AAL |
116 |
No |
No |
Yes |
Delineated with respect to anatomical landmarks (following sulci course in brain) |
12758.353 |
MNI |
Automated anatomical labelling based on sulci. |
https://www.ncbi.nlm.nih.gov/pubmed/11771995 |
2002 |
https://www.gin.cnrs.fr/en/tools/aal/ http://www.gin.cnrs.fr/wp-content/uploads/aal2_for_SPM12.tar.gz |
AICHA |
384 |
No |
No |
Yes |
Built by estimation of resting-state networks, k-means clustering, homotopic regional grouping based on maximal inter-hemispheric functional correlation, and ROI labeling. |
3004.333 |
N/A |
Adaptation of AAL focused on the idea that each region in one hemisphere has a homologue in the other hemisphere |
https://www.ncbi.nlm.nih.gov/pubmed/26213217 |
2015 |
Included in mricron: https://people.cas.sc.edu/rorden/mricron/index.html |
Brodmann |
40 |
Yes |
Yes |
No |
Corticall parcellation separating regions based on cellular morphology and organization |
32978.512 |
N/A |
Brodman areas separated by gyri |
http://digital.zbmed.de/zbmed/id/554966 |
1909 |
https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps |
CAPRSC |
333 |
Yes |
No |
Yes |
Automatic using resting-state functional connectivity (RSFC) boundary maps |
1389.09 |
N/A |
Created using RSFC-boundary maps to define parcels that represent putative cortical areas. Focuses on the cortical surface and was created using functional MRI scans. |
https://www.ncbi.nlm.nih.gov/pubmed/25316338 |
2016 |
Obtained from Freesurfer: https://sites.wustl.edu/petersenschlaggarlab/parcels-19cwpgu/ |
CPAC200 |
200 |
No |
No |
No |
Created by parcellating whole brain resting-state fMRI data into spatially coherent regions of homogeneous functional connectivity. |
5860.755 |
N/A |
ROIs with anatomic homology |
https://pubmed.ncbi.nlm.nih.gov/21769991/ |
2018 |
https://fcp-indi.s3.amazonaws.com/data/Projects/ABIDE_Initiative/Resources/cc200_roi_atlas.nii.gz |
Desikan |
70 |
Yes |
No |
No |
Anatomical Landmarks based on gyri. Averaged based on majority voting |
24786.857 |
N/A |
Surface parcellation |
https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub |
2006 |
Obtained from FreeSurfer: https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation |
DesikanKlein |
97 |
No |
No |
No |
Automated labeling system that subdivided the human cerebral cortex into gyral based regions of interest. |
74443.62 |
N/A |
Gyral based parcellations |
https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub |
2006 |
Obtained from FreeSurfer: https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation |
Destrieux |
75 |
Yes |
No |
Yes |
Automatically assigned a neuroanatomical label to each location on a cortical surface model based on probabilistic information estimated from a manually labeled training set. |
96280.43 |
MNI152 |
Cortical surface probabilitstic atlas |
https://academic.oup.com/cercor/article/14/1/11/433466 |
2004 |
Obtained from FreeSurfer: https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation |
DKT |
84 |
Yes |
No |
No |
Automatic |
85964.66 |
N/A |
Created by using a modified Desikan protocol in order to improve segmentation and make it more suited for FreeSurfer’s classifier algorithm. |
https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full |
2012 |
Obtained from FreeSurfer: https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation |
Glasser |
360 |
Yes |
Yes |
Yes |
Semi-automated. Separated based on function, connectivity, cortical architecture, topography, and expert analysis |
521.994 |
MNI |
Cortical parcellation from multi-modal images of 210 adults in HCP |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/ |
2016 |
https://balsa.wustl.edu/file/show/3VLx |
Hammersmith |
83 |
No |
No |
Yes |
Algorithm using prior information from 30 normal adult brain MR images, which had been manually segmented to create 30 atlases, each labeling 83 anatomical structures. |
19947.72 |
MNI152 |
Automatic segmentation of young children's brains into 83 regions of interest. |
https://www.sciencedirect.com/science/article/pii/S1053811907010634?via%3Dihub |
2003 |
http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/ |
HarvardOxford |
48 |
No |
Yes |
Yes |
Created by subdividing neocortex by topographic criteria into 48 parcellation units corresponding to the principal cerebral gyri. |
21966.104 |
N/A |
Neuroanatomic subdivisions delineated by this general segmentation generaly corresponding to natural gray matter boundaries. |
https://www.sciencedirect.com/science/article/pii/S0920996405004998?via%3Dihub |
2005 |
Included in FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases |
JHU |
48 |
Yes |
No |
Yes |
One subject manually labelled and warped to 29 other adult atlases (Large Deformation Diffeomorphic Metric Mapping) |
3541.792 |
N/A |
A small version of a larger (289 ROI) atlas composed based on parcellation of deep white matter. Split into 4 groups: Tracts in the brainstem, projection fibers, association fibers, and commisural fibers |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724595/ |
2004 |
https://neurovault.org/collections/264/ |
Juelich |
103 |
No |
No |
Yes |
Probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations. |
69433 |
N/A |
N/A |
https://linkinghub.elsevier.com/retrieve/pii/S1053-8119(04)00792-X |
2005 |
https://interactive-viewer.apps.hbp.eu/?templateSelected=MNI+Colin+27&parcellationSelected=JuBrain+Cytoarchitectonic+Atlas |
MICCAI |
136 |
No |
No |
No |
N/A |
52708.26 |
N/A |
N/A |
MICCAI 2012 Workshop: https://my.vanderbilt.edu/masi/workshops/ |
2012 |
http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html |
Princeton |
49 |
Yes |
Yes |
Yes |
Identified 25 topographic maps in a large population of individual subjects and transformed them into either surface- or volume-based standardized space. |
1217.388 |
N/A |
Atlas exclusively containing parcellations of the visual cortex. |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585523/ |
2015 |
https://scholar.princeton.edu/napl/resources |
Schaefer1000 |
1000 |
No |
No |
No |
Automatic using gwMRF |
1055.685 |
N/A |
Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) |
http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf |
2017 |
https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal https://minhaskamal.github.io/DownGit/#/home?url=https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations |
Schaefer200 |
200 |
No |
No |
No |
Automatic using gwMRF |
5278.425 |
N/A |
Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) |
http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf |
2017 |
https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal https://minhaskamal.github.io/DownGit/#/home?url=https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations |
Schaefer300 |
300 |
No |
No |
No |
Automatic using gwMRF |
3518.95 |
N/A |
Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) |
http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf |
2017 |
https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal https://minhaskamal.github.io/DownGit/#/home?url=https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations |
Schaefer400 |
400 |
No |
No |
No |
Automatic using gwMRF |
2639.213 |
N/A |
Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) |
http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf |
2017 |
https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal https://minhaskamal.github.io/DownGit/#/home?url=https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations |
Slab1068 |
1068 |
No |
No |
No |
Calculated spatially averaged time series for each of 1068 regions of interest placed in a regular 12-mm grid throughout the brain |
493.719 |
N/A |
Grid of ROI points spanning entire MNI brain volume. |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507181/ |
2017 |
https://umich.app.box.com/s/w46icx4bng1mw1nc3sg72t13ug5ecyib https://www.nitrc.org/projects/kessler_jama16/ |
Slab907 |
907 |
No |
No |
No |
Placed 907 ROIs at regular intervals throughout the cortex |
7952.68 |
N/A |
Grid of ROI points spanning entire MNI brain volume |
https://pubmed.ncbi.nlm.nih.gov/25225387/ |
2014 |
https://umich.app.box.com/s/jowv4pogzhbfevt301n8 |
Talairach |
1105 |
No |
Yes |
Yes |
Semi-automated? |
1698.114 |
Talairach coordinates |
A hierarchical atlas split into 5 leves: Hemisphere, Lobe, Gyrus, Tissue Type, and Cell Type |
https://www.ncbi.nlm.nih.gov/pubmed/7008525 |
1980 |
http://www.talairach.org/ |
Tissue |
3 |
|
No |
No |
N/A |
609031.667 |
N/A |
|
(Tissue-based segmentation: WM, GM, CSF) |
2018 |
|
Yeo 17 |
17 |
Yes |
No |
Yes |
Clustered to identify networks of functionally coupled regions |
31040.294 |
FreeSurfer surface space |
Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ |
2011 |
https://ftp.nmr.mgh.harvard.edu/pub/data/Yeo_JNeurophysiol11_MNI152.zip http://www.freesurfer.net/fswiki/CorticalParcellation_Yeo2011 |
Yeo 17 Liberal |
17 |
Yes |
No |
Yes |
Clustered to identify networks of functionally coupled regions |
62043.118 |
FreeSurfer surface space |
Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ |
2011 |
https://ftp.nmr.mgh.harvard.edu/pub/data/Yeo_JNeurophysiol11_MNI152.zip http://www.freesurfer.net/fswiki/CorticalParcellation_Yeo2011 |
Yeo 7 |
7 |
Yes |
No |
Yes |
Clustered to identify networks of functionally coupled regions |
75383.571 |
FreeSurfer surface space |
Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ |
2011 |
https://ftp.nmr.mgh.harvard.edu/pub/data/Yeo_JNeurophysiol11_MNI152.zip http://www.freesurfer.net/fswiki/CorticalParcellation_Yeo2011 |
Yeo 7 Liberal |
7 |
Yes |
No |
Yes |
Clustered to identify networks of functionally coupled regions |
150676.143 |
FreeSurfer surface space |
Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ |
2011 |
https://ftp.nmr.mgh.harvard.edu/pub/data/Yeo_JNeurophysiol11_MNI152.zip http://www.freesurfer.net/fswiki/CorticalParcellation_Yeo2011 |
DS Family |
71 - 72784 |
No |
No |
No |
Grid segmentation of entire MNI brain |
Variable |
N/A |
Grid segmentation of entire MNI brain |
https://ieeexplore.ieee.org/document/6736874 |
2013 |
N/A |