report_log.html 17 KB

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  1. <HTML><HEAD>
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  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Thu 19 Mar 2020 09:34:29 AM CET<p>
  8. Feat main script<br><pre>
  9. /bin/cp /data/project/studyforrest_ppa/sub-19/run-5_1st_audio-ppa-ind.fsf design.fsf
  10. /usr/share/fsl/5.0/bin/feat_model design
  11. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
  12. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 9.36705e-18)
  13. Contrasts involving these combinations will be set to zero.
  14. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
  15. /usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -I 1 -init
  16. 24991
  17. /usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 24991 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -I 1 -prestats
  18. 25726
  19. /usr/share/fsl/5.0/bin/fsl_sub -T 261 -l logs -N feat3_film -j 25726 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -I 1 -stats
  20. 35000
  21. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 35000 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -poststats 0
  22. 36079
  23. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 25726,35000,36079 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -stop
  24. 914
  25. </pre><hr>Initialisation<br><pre>
  26. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-19/in_bold3Tp2/sub-19_task-aomovie_run-5_bold prefiltered_func_data -odt float
  27. Total original volumes = 462
  28. /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 231 1
  29. </pre><hr>Preprocessing:Stage 1<br><pre>
  30. </pre><hr>Preprocessing:Stage 2<br><pre>
  31. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
  32. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
  33. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
  34. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
  35. 0.000000 787.000000
  36. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 78.7 -Tmin -bin mask -odt char
  37. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
  38. 503.000000
  39. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
  40. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
  41. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
  42. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 377.25 1.6985138004246285 3 1 1 mean_func 377.25 prefiltered_func_data_smooth
  43. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
  44. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 19.880715705765407 prefiltered_func_data_intnorm
  45. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
  46. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.5 -1 -add tempMean prefiltered_func_data_tempfilt
  47. /usr/share/fsl/5.0/bin/imrm tempMean
  48. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
  49. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
  50. /bin/rm -rf prefiltered_func_data*
  51. </pre><hr>Stats<br><pre>
  52. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/body.txt custom_timing_files/ev1.txt
  53. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/bpart.txt custom_timing_files/ev2.txt
  54. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/fahead.txt custom_timing_files/ev3.txt
  55. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/furn.txt custom_timing_files/ev4.txt
  56. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/groom.txt custom_timing_files/ev6.txt
  57. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/obj.txt custom_timing_files/ev7.txt
  58. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/se_new.txt custom_timing_files/ev8.txt
  59. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/se_old.txt custom_timing_files/ev9.txt
  60. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/sex_f.txt custom_timing_files/ev10.txt
  61. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/sex_m.txt custom_timing_files/ev11.txt
  62. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vse_new.txt custom_timing_files/ev12.txt
  63. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vse_old.txt custom_timing_files/ev13.txt
  64. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vpe_new.txt custom_timing_files/ev15.txt
  65. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vpe_old.txt custom_timing_files/ev16.txt
  66. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
  67. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/fg_ad_rms.txt custom_timing_files/ev18.txt
  68. paste -d ' ' /data/project/studyforrest_ppa/inputs/phase1/sub019/BOLD/task001_run005/bold_dico_moco.txt > confoundevs.txt
  69. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
  70. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
  71. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 1.21898e-17)
  72. Contrasts involving these combinations will be set to zero.
  73. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con
  74. Log directory is: stats
  75. paradigm.getDesignMatrix().Nrows()=462
  76. paradigm.getDesignMatrix().Ncols()=42
  77. sizeTS=462
  78. numTS=65530
  79. Calculating residuals...
  80. Completed
  81. Estimating residual autocorrelation...
  82. Calculating raw AutoCorrs... Completed
  83. mode = 10185.8
  84. sig = 2879
  85. Spatially smoothing auto corr estimates
  86. ....................
  87. Completed
  88. Tukey M = 21
  89. Tukey estimates... Completed
  90. Completed
  91. Prewhitening and Computing PEs...
  92. Percentage done:
  93. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
  94. Saving results...
  95. Completed
  96. /usr/share/fsl/5.0/bin/smoothest -d 420 -m mask -r stats/res4d > stats/smoothness
  97. </pre><hr>Post-stats<br><pre>
  98. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  99. echo 65530 > thresh_zstat1.vol
  100. zstat1: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  101. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
  102. echo 65530 > thresh_zstat2.vol
  103. zstat2: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  104. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
  105. echo 65530 > thresh_zstat3.vol
  106. zstat3: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  107. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
  108. echo 65530 > thresh_zstat4.vol
  109. zstat4: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  110. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
  111. echo 65530 > thresh_zstat5.vol
  112. zstat5: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  113. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
  114. echo 65530 > thresh_zstat6.vol
  115. zstat6: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  116. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
  117. echo 65530 > thresh_zstat7.vol
  118. zstat7: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  119. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
  120. echo 65530 > thresh_zstat8.vol
  121. zstat8: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  122. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
  123. echo 65530 > thresh_zstat9.vol
  124. zstat9: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  125. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
  126. echo 65530 > thresh_zstat10.vol
  127. zstat10: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  128. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
  129. echo 65530 > thresh_zstat11.vol
  130. zstat11: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  131. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
  132. echo 65530 > thresh_zstat12.vol
  133. zstat12: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  134. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
  135. echo 65530 > thresh_zstat13.vol
  136. zstat13: DLH=0.264809 VOLUME=65530 RESELS=17.4444
  137. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
  138. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
  139. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
  140. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
  141. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
  142. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
  143. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
  144. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
  145. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
  146. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
  147. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
  148. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
  149. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
  150. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
  151. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
  152. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
  153. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
  154. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
  155. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
  156. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
  157. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26 --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
  158. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11
  159. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26 --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
  160. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12
  161. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26 --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
  162. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13
  163. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  164. 0.000000 0.000000
  165. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
  166. 0.000000 0.000000
  167. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
  168. 0.000000 0.000000
  169. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
  170. 0.000000 0.000000
  171. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
  172. 0.000000 0.000000
  173. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
  174. 0.000000 0.000000
  175. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
  176. 0.000000 0.000000
  177. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
  178. 0.000000 0.000000
  179. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
  180. 0.000000 0.000000
  181. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
  182. 0.000000 0.000000
  183. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
  184. 0.000000 0.000000
  185. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
  186. 0.000000 0.000000
  187. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
  188. 0.000000 0.000000
  189. Rendering using zmin=2.3 zmax=8
  190. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 2.3 8 rendered_thresh_zstat1
  191. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
  192. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  193. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 2.3 8 rendered_thresh_zstat2
  194. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
  195. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 2.3 8 rendered_thresh_zstat3
  196. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
  197. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 2.3 8 rendered_thresh_zstat4
  198. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
  199. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 2.3 8 rendered_thresh_zstat5
  200. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
  201. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 2.3 8 rendered_thresh_zstat6
  202. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
  203. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 2.3 8 rendered_thresh_zstat7
  204. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
  205. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 2.3 8 rendered_thresh_zstat8
  206. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
  207. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 2.3 8 rendered_thresh_zstat9
  208. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
  209. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 2.3 8 rendered_thresh_zstat10
  210. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
  211. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 2.3 8 rendered_thresh_zstat11
  212. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
  213. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 2.3 8 rendered_thresh_zstat12
  214. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
  215. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 2.3 8 rendered_thresh_zstat13
  216. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
  217. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
  218. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>