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chaeusler
/
studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
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studyforrest...
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sub-19
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run-5_audio-ppa-ind.feat
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report_log.html

report_log.html 17 KB
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  1. <HTML><HEAD>
    2. 

  2. <!--refreshstart-->
    3. 

  3. 

  4. <!--refreshstop-->
    5. 

  5. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
    6. 

  6. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
    7. 

  7. <h2>Progress Report / Log</h2>
    8. 

  8. Started at Thu 19 Mar 2020 09:34:29 AM CET<p>
    9. 

  9. Feat main script<br><pre>
    10. 

  10. 

  11. /bin/cp /data/project/studyforrest_ppa/sub-19/run-5_1st_audio-ppa-ind.fsf design.fsf
    12. 

  12. 

  13. /usr/share/fsl/5.0/bin/feat_model design
    14. 

  14. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
    15. 

  15. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 9.36705e-18)
    16. 

  16.  Contrasts involving these combinations will be set to zero.
    17. 

  17. 

  18. 

  19. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
    20. 

  20. 

  21. /usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -I 1 -init
    22. 

  22. 24991
    23. 

  23. 

  24. /usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 24991  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -I 1 -prestats
    25. 

  25. 25726
    26. 

  26. 

  27. /usr/share/fsl/5.0/bin/fsl_sub -T 261 -l logs -N feat3_film -j 25726  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -I 1 -stats
    28. 

  28. 35000
    29. 

  29. 

  30. /usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 35000  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -poststats 0 
    31. 

  31. 36079
    32. 

  32. 

  33. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 25726,35000,36079  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat -stop
    34. 

  34. 914
    35. 

  35. </pre><hr>Initialisation<br><pre>
    36. 

  36. 

  37. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-19/in_bold3Tp2/sub-19_task-aomovie_run-5_bold prefiltered_func_data -odt float
    38. 

  38. Total original volumes = 462
    39. 

  39. 

  40. /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 231 1
    41. 

  41. </pre><hr>Preprocessing:Stage 1<br><pre>
    42. 

  42. </pre><hr>Preprocessing:Stage 2<br><pre>
    43. 

  43. 

  44. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
    45. 

  45. 

  46. /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
    47. 

  47. 

  48. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
    49. 

  49. 

  50. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
    51. 

  51. 0.000000 787.000000 
    52. 

  52. 

  53. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 78.7 -Tmin -bin mask -odt char
    54. 

  54. 

  55. /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
    56. 

  56. 503.000000 
    57. 

  57. 

  58. /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
    59. 

  59. 

  60. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
    61. 

  61. 

  62. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
    63. 

  63. 

  64. /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 377.25 1.6985138004246285 3 1 1 mean_func 377.25 prefiltered_func_data_smooth
    65. 

  65. 

  66. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
    67. 

  67. 

  68. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 19.880715705765407 prefiltered_func_data_intnorm
    69. 

  69. 

  70. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
    71. 

  71. 

  72. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.5 -1 -add tempMean prefiltered_func_data_tempfilt
    73. 

  73. 

  74. /usr/share/fsl/5.0/bin/imrm tempMean
    75. 

  75. 

  76. /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
    77. 

  77. 

  78. /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
    79. 

  79. 

  80. /bin/rm -rf prefiltered_func_data*
    81. 

  81. </pre><hr>Stats<br><pre>
    82. 

  82. 

  83. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/body.txt custom_timing_files/ev1.txt
    84. 

  84. 

  85. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/bpart.txt custom_timing_files/ev2.txt
    86. 

  86. 

  87. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/fahead.txt custom_timing_files/ev3.txt
    88. 

  88. 

  89. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/furn.txt custom_timing_files/ev4.txt
    90. 

  90. 

  91. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/groom.txt custom_timing_files/ev6.txt
    92. 

  92. 

  93. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/obj.txt custom_timing_files/ev7.txt
    94. 

  94. 

  95. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/se_new.txt custom_timing_files/ev8.txt
    96. 

  96. 

  97. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/se_old.txt custom_timing_files/ev9.txt
    98. 

  98. 

  99. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/sex_f.txt custom_timing_files/ev10.txt
    100. 

  100. 

  101. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/sex_m.txt custom_timing_files/ev11.txt
    102. 

  102. 

  103. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vse_new.txt custom_timing_files/ev12.txt
    104. 

  104. 

  105. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vse_old.txt custom_timing_files/ev13.txt
    106. 

  106. 

  107. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vpe_new.txt custom_timing_files/ev15.txt
    108. 

  108. 

  109. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/vpe_old.txt custom_timing_files/ev16.txt
    110. 

  110. 

  111. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/fg_ad_lrdiff.txt custom_timing_files/ev17.txt
    112. 

  112. 

  113. mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-19/onsets/aomovie/run-5/fg_ad_rms.txt custom_timing_files/ev18.txt
    114. 

  114. 

  115. paste -d  ' '  /data/project/studyforrest_ppa/inputs/phase1/sub019/BOLD/task001_run005/bold_dico_moco.txt > confoundevs.txt
    116. 

  116. 

  117. /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt
    118. 

  118. Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
    119. 

  119. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 1.21898e-17)
    120. 

  120.  Contrasts involving these combinations will be set to zero.
    121. 

  121. 

  122. 

  123. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con  
    124. 

  124. Log directory is: stats
    125. 

  125. paradigm.getDesignMatrix().Nrows()=462
    126. 

  126. paradigm.getDesignMatrix().Ncols()=42
    127. 

  127. sizeTS=462
    128. 

  128. numTS=65530
    129. 

  129. Calculating residuals...
    130. 

  130. Completed
    131. 

  131. Estimating residual autocorrelation...
    132. 

  132. Calculating raw AutoCorrs... Completed
    133. 

  133. mode = 10185.8
    134. 

  134. sig = 2879
    135. 

  135. Spatially smoothing auto corr estimates
    136. 

  136. ....................
    137. 

  137. Completed
    138. 

  138. Tukey M = 21
    139. 

  139. Tukey estimates... Completed
    140. 

  140. Completed
    141. 

  141. Prewhitening and Computing PEs...
    142. 

  142. Percentage done:
    143. 

  143. 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
    144. 

  144. Saving results... 
    145. 

  145. Completed
    146. 

  146. 

  147. /usr/share/fsl/5.0/bin/smoothest -d 420   -m mask -r stats/res4d > stats/smoothness
    148. 

  148. </pre><hr>Post-stats<br><pre>
    149. 

  149. 

  150. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
    151. 

  151. 

  152. echo 65530 > thresh_zstat1.vol
    153. 

  153. zstat1: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    154. 

  154. 

  155. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
    156. 

  156. 

  157. echo 65530 > thresh_zstat2.vol
    158. 

  158. zstat2: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    159. 

  159. 

  160. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
    161. 

  161. 

  162. echo 65530 > thresh_zstat3.vol
    163. 

  163. zstat3: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    164. 

  164. 

  165. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
    166. 

  166. 

  167. echo 65530 > thresh_zstat4.vol
    168. 

  168. zstat4: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    169. 

  169. 

  170. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
    171. 

  171. 

  172. echo 65530 > thresh_zstat5.vol
    173. 

  173. zstat5: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    174. 

  174. 

  175. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
    176. 

  176. 

  177. echo 65530 > thresh_zstat6.vol
    178. 

  178. zstat6: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    179. 

  179. 

  180. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
    181. 

  181. 

  182. echo 65530 > thresh_zstat7.vol
    183. 

  183. zstat7: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    184. 

  184. 

  185. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
    186. 

  186. 

  187. echo 65530 > thresh_zstat8.vol
    188. 

  188. zstat8: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    189. 

  189. 

  190. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
    191. 

  191. 

  192. echo 65530 > thresh_zstat9.vol
    193. 

  193. zstat9: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    194. 

  194. 

  195. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
    196. 

  196. 

  197. echo 65530 > thresh_zstat10.vol
    198. 

  198. zstat10: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    199. 

  199. 

  200. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
    201. 

  201. 

  202. echo 65530 > thresh_zstat11.vol
    203. 

  203. zstat11: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    204. 

  204. 

  205. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
    206. 

  206. 

  207. echo 65530 > thresh_zstat12.vol
    208. 

  208. zstat12: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    209. 

  209. 

  210. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
    211. 

  211. 

  212. echo 65530 > thresh_zstat13.vol
    213. 

  213. zstat13: DLH=0.264809 VOLUME=65530 RESELS=17.4444
    214. 

  214. 

  215. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26  --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
    216. 

  216. 

  217. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 
    218. 

  218. 

  219. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26  --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
    220. 

  220. 

  221. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2 
    222. 

  222. 

  223. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26  --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
    224. 

  224. 

  225. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3 
    226. 

  226. 

  227. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26  --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
    228. 

  228. 

  229. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4 
    230. 

  230. 

  231. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26  --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
    232. 

  232. 

  233. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5 
    234. 

  234. 

  235. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26  --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
    236. 

  236. 

  237. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6 
    238. 

  238. 

  239. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26  --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
    240. 

  240. 

  241. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7 
    242. 

  242. 

  243. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26  --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
    244. 

  244. 

  245. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8 
    246. 

  246. 

  247. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26  --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
    248. 

  248. 

  249. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9 
    250. 

  250. 

  251. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26  --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
    252. 

  252. 

  253. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10 
    254. 

  254. 

  255. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26  --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
    256. 

  256. 

  257. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11 
    258. 

  258. 

  259. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26  --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
    260. 

  260. 

  261. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12 
    262. 

  262. 

  263. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.264809 --volume=65530 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26  --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
    264. 

  264. 

  265. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13 
    266. 

  266. 

  267. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
    268. 

  268. 0.000000 0.000000 
    269. 

  269. 

  270. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
    271. 

  271. 0.000000 0.000000 
    272. 

  272. 

  273. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
    274. 

  274. 0.000000 0.000000 
    275. 

  275. 

  276. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
    277. 

  277. 0.000000 0.000000 
    278. 

  278. 

  279. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
    280. 

  280. 0.000000 0.000000 
    281. 

  281. 

  282. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
    283. 

  283. 0.000000 0.000000 
    284. 

  284. 

  285. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
    286. 

  286. 0.000000 0.000000 
    287. 

  287. 

  288. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
    289. 

  289. 0.000000 0.000000 
    290. 

  290. 

  291. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
    292. 

  292. 0.000000 0.000000 
    293. 

  293. 

  294. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
    295. 

  295. 0.000000 0.000000 
    296. 

  296. 

  297. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
    298. 

  298. 0.000000 0.000000 
    299. 

  299. 

  300. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
    301. 

  301. 0.000000 0.000000 
    302. 

  302. 

  303. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
    304. 

  304. 0.000000 0.000000 
    305. 

  305. Rendering using zmin=2.3 zmax=8
    306. 

  306. 

  307. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 2.3 8 rendered_thresh_zstat1
    308. 

  308. 

  309. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
    310. 

  310. 

  311. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    312. 

  312. 

  313. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 2.3 8 rendered_thresh_zstat2
    314. 

  314. 

  315. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
    316. 

  316. 

  317. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 2.3 8 rendered_thresh_zstat3
    318. 

  318. 

  319. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
    320. 

  320. 

  321. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 2.3 8 rendered_thresh_zstat4
    322. 

  322. 

  323. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
    324. 

  324. 

  325. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 2.3 8 rendered_thresh_zstat5
    326. 

  326. 

  327. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
    328. 

  328. 

  329. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 2.3 8 rendered_thresh_zstat6
    330. 

  330. 

  331. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
    332. 

  332. 

  333. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 2.3 8 rendered_thresh_zstat7
    334. 

  334. 

  335. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
    336. 

  336. 

  337. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 2.3 8 rendered_thresh_zstat8
    338. 

  338. 

  339. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
    340. 

  340. 

  341. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 2.3 8 rendered_thresh_zstat9
    342. 

  342. 

  343. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
    344. 

  344. 

  345. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 2.3 8 rendered_thresh_zstat10
    346. 

  346. 

  347. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
    348. 

  348. 

  349. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 2.3 8 rendered_thresh_zstat11
    350. 

  350. 

  351. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
    352. 

  352. 

  353. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 2.3 8 rendered_thresh_zstat12
    354. 

  354. 

  355. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
    356. 

  356. 

  357. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 2.3 8 rendered_thresh_zstat13
    358. 

  358. 

  359. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
    360. 

  360. 

  361. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
    362. 

  362. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    363.