report_log.html 90 KB

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  1. <HTML><HEAD>
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  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Thu 19 Mar 2020 06:58:04 AM CET<p>
  8. Feat main script<br><pre>
  9. /bin/cp /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.fsf design.fsf
  10. /usr/share/fsl/5.0/bin/feat_model design
  11. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
  12. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat -gfeatprep
  13. 2142
  14. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -I 1 -flame1
  15. 9402
  16. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 9402 -t ./.flame
  17. 12967
  18. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 12967 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -flame3
  19. 16586
  20. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 16586 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -poststats 1
  21. 16979
  22. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 16979 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -stop
  23. 21168
  24. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -I 2 -flame1
  25. 23525
  26. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 23525 -t ./.flame
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  28. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 27037 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -flame3
  29. 31323
  30. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 31323 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -poststats 1
  31. 32421
  32. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 32421 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -stop
  33. 5154
  34. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -I 3 -flame1
  35. 7564
  36. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 7564 -t ./.flame
  37. 10229
  38. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 10229 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -flame3
  39. 14128
  40. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 14128 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -poststats 1
  41. 15186
  42. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 15186 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -stop
  43. 21097
  44. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -I 4 -flame1
  45. 23412
  46. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 23412 -t ./.flame
  47. 25099
  48. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 25099 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -flame3
  49. 29993
  50. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 29993 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -poststats 1
  51. 30888
  52. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 30888 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -stop
  53. 4921
  54. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -I 5 -flame1
  55. 6397
  56. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 6397 -t ./.flame
  57. 7824
  58. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 7824 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -flame3
  59. 12775
  60. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 12775 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -poststats 1
  61. 13714
  62. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 13714 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -stop
  63. 20085
  64. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -I 6 -flame1
  65. 21181
  66. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 21181 -t ./.flame
  67. 22791
  68. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 22791 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -flame3
  69. 28316
  70. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 28316 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -poststats 1
  71. 29097
  72. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 29097 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -stop
  73. 3037
  74. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -I 7 -flame1
  75. 3917
  76. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 3917 -t ./.flame
  77. 5474
  78. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 5474 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -flame3
  79. 11841
  80. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 11841 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -poststats 1
  81. 12638
  82. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 12638 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -stop
  83. 18288
  84. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -I 8 -flame1
  85. 19142
  86. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 19142 -t ./.flame
  87. 20853
  88. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 20853 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -flame3
  89. 26750
  90. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 26750 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -poststats 1
  91. 27655
  92. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 27655 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -stop
  93. 700
  94. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -I 9 -flame1
  95. 1612
  96. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 1612 -t ./.flame
  97. 3529
  98. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 3529 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -flame3
  99. 9580
  100. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 9580 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -poststats 1
  101. 10891
  102. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 10891 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -stop
  103. 16040
  104. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 2142 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -I 10 -flame1
  105. 17043
  106. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 17043 -t ./.flame
  107. 18966
  108. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 18966 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -flame3
  109. 24215
  110. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 24215 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -poststats 1
  111. 24746
  112. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 24746 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -stop
  113. 28450
  114. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 21168,5154,21097,4921,20085,3037,18288,700,16040,28450 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-04/2nd-lvl_movie-ppa-ind.gfeat -stop
  115. </pre><hr>Higher-level input files preparation<br><pre>
  116. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat
  117. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_Ax4dFn -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  118. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_9jjKkW -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  119. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_HS0hoe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  120. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_iB9Wyr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  121. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_YcVUvC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  122. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_aiIkKO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  123. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_VhhYcU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  124. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_K9aub9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  125. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_tv2qvk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  126. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_jvG8Kz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  127. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_wkm7WL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  128. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_ih1PZX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  129. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_TIpGd2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  130. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_joGMqe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  131. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_FegiLt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  132. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_LCDiYF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  133. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_i40nCV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  134. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_V69985 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  135. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_lVu399 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  136. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_moaUZm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  137. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_YdxKjB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  138. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_5WfD1Q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  139. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_br14M6 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  140. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat
  141. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_3q3Cnd -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  142. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_L1X5VI -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  143. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_NuYOxc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  144. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_ERN0td -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  145. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_uIXcss -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  146. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_PaS1UE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  147. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_1kKSRQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  148. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_hWMAg5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  149. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_WElu8k -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  150. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_gA7Ohm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  151. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_8591uA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  152. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_sMjHFQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  153. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_dWD042 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  154. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_vjhm9g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  155. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Rurfmm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  156. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_TNWPOw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  157. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_ub4RrJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  158. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_owmFFZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  159. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_dZmjGa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  160. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_JWNgNq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  161. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_fmAXTu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  162. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_ZeWgsF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  163. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_CtoIPU -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  164. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat
  165. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_OlGPaf -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  166. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_stTSPA -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  167. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_YHtKg4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  168. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_TlrGog -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  169. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_wyi4Qr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  170. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_D5Ulhw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  171. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_V9QZ3L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  172. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_XdkH9W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  173. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_NEz0Gc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  174. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_fDq4yp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  175. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_BI0POA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  176. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_uufhaH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  177. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_ODY9cX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  178. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_KdEcN8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  179. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_khhNSm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  180. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_kJVvzD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  181. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_qaL9jH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  182. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_6QRVKS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  183. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_ADgD66 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  184. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_3Hqm5j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  185. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_okEtbz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  186. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_zxAEiI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  187. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_POyVgQ -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  188. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat
  189. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_kkoPh7 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  190. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_Jrg9VA -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  191. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_BnQQhY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  192. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_odCNvb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  193. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_ysQpyn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  194. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_IdudBB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  195. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_xn1g7M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  196. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_kX9K2Q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  197. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_rcxCK7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  198. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_ecM40j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  199. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_tg5fXu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  200. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_y9eDkK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  201. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_ofx02O -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  202. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Ze0Op3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  203. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_ApAQVf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  204. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_i1qSZr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  205. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_0GZDQE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  206. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_vJiahQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  207. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_FTNDbU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  208. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_GUkox8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  209. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_uOyBGo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  210. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_1HWshB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  211. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_bDW7eQ -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  212. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat
  213. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_pZwVGW -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  214. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_aLDRUo -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  215. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_mCGGaT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  216. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_p7NNS4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  217. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_UJTcCa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  218. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_Ux8Xsn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  219. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_vBIPdC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  220. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_9voigP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  221. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_NGpc54 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  222. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_DnjHU8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  223. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_YFkLwk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  224. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_3UPZwy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  225. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_BPleMO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  226. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Tfi900 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  227. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_wpdwKd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  228. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Yefw5f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  229. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_k0gEwt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  230. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_3pVfwF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  231. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_p6PuHV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  232. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_5lJ9W6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  233. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_Lu2Nya -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  234. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_uLVC7p -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  235. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_D4v88A -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  236. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat
  237. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_TkR1rW -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  238. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_jYmsfi -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  239. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_xj8R9H -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  240. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_e4q0wX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  241. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_bynFHa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  242. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_CqYwdl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  243. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_7YY9jq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  244. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_7Tl9jB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  245. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Bo6RXR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  246. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_sTagf4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  247. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_HigbPe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  248. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_OdQuKu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  249. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_cmsqBz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  250. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Yl9bKN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  251. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Wk9mQZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  252. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_cS4vob -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  253. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_140a5n -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  254. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_3XMhxs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  255. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_kLoGNG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  256. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_VZc15S -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  257. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_wvD8x9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  258. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_4x7Wwn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  259. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_UOpTqC -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  260. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat
  261. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_C5oeLL -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  262. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_EFYulc -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  263. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_iMLmKG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  264. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_xsLoxG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  265. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_o07FsX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  266. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_3SSKDb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  267. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_RuheUk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  268. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_53wZ5z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  269. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_LG7q2A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  270. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_FxNBwQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  271. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_b0vEN1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  272. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_81ilYd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  273. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_fXQxMu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  274. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_PfOycG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  275. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_CMMIhK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  276. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_bPd8wW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  277. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_heBNGb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  278. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_CNMDqo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  279. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_vBg4Iz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  280. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_njE8aO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  281. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_IN1dcQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  282. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_6IVXo5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  283. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_iWmzlk -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  284. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat
  285. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_kE09AA -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  286. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_fsHx0V -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
  287. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_31SEXp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  288. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_0ingQB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  289. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_ztkM0O -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  290. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_FIbSRT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  291. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_eAshu4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  292. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_F9oeCh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  293. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_bEhchx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  294. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_qtYcWL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  295. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_zFSPHW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  296. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_DebPo5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  297. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_os2opj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  298. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_dAERou -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  299. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_L1C7JK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  300. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_72WDLX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  301. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_lMVh30 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  302. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_GTVCnc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  303. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_zNQWAo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  304. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_8kR7lE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  305. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_rIAxzQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  306. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_4Qsop5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
  307. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_nPkim9 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
  308. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg/standard bg_image
  309. /usr/share/fsl/5.0/bin/fslmerge -t mask /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/mask
  310. mkdir -p inputreg
  311. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short
  312. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum
  313. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay
  314. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
  315. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
  316. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
  317. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
  318. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
  319. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
  320. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
  321. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
  322. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
  323. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
  324. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique
  325. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay
  326. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
  327. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  328. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
  329. /usr/share/fsl/5.0/bin/fslmerge -t mean_func /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/mean_func
  330. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
  331. /usr/share/fsl/5.0/bin/fslmerge -t cope1 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1
  332. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
  333. printf '0.05547516375 ' >> design.lcon
  334. /usr/share/fsl/5.0/bin/fslmerge -t varcope1 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope1
  335. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
  336. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  337. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  338. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  339. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  340. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  341. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  342. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  343. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  344. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
  345. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
  346. /usr/share/fsl/5.0/bin/fslmerge -t cope2 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2
  347. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
  348. printf '0.037094789999999996 ' >> design.lcon
  349. /usr/share/fsl/5.0/bin/fslmerge -t varcope2 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope2
  350. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
  351. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  352. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  353. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  354. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  355. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  356. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  357. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  358. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  359. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t2 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
  360. /usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2
  361. /usr/share/fsl/5.0/bin/fslmerge -t cope3 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3
  362. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
  363. printf '0.04445256 ' >> design.lcon
  364. /usr/share/fsl/5.0/bin/fslmerge -t varcope3 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope3
  365. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
  366. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  367. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  368. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  369. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  370. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  371. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  372. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  373. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  374. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t3 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
  375. /usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3
  376. /usr/share/fsl/5.0/bin/fslmerge -t cope4 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4
  377. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
  378. printf '0.02846807 ' >> design.lcon
  379. /usr/share/fsl/5.0/bin/fslmerge -t varcope4 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope4
  380. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
  381. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  382. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  383. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  384. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  385. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  386. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  387. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  388. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  389. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t4 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
  390. /usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4
  391. /usr/share/fsl/5.0/bin/fslmerge -t cope5 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5
  392. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
  393. printf '0.038514848750000004 ' >> design.lcon
  394. /usr/share/fsl/5.0/bin/fslmerge -t varcope5 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope5
  395. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
  396. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  397. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  398. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  399. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  400. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  401. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  402. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  403. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  404. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t5 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
  405. /usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5
  406. /usr/share/fsl/5.0/bin/fslmerge -t cope6 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6
  407. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
  408. printf '0.047357185 ' >> design.lcon
  409. /usr/share/fsl/5.0/bin/fslmerge -t varcope6 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope6
  410. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
  411. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  412. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  413. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  414. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  415. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  416. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  417. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  418. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  419. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t6 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
  420. /usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6
  421. /usr/share/fsl/5.0/bin/fslmerge -t cope7 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7
  422. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
  423. printf '0.045573725 ' >> design.lcon
  424. /usr/share/fsl/5.0/bin/fslmerge -t varcope7 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope7
  425. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
  426. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  427. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  428. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  429. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  430. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  431. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  432. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  433. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  434. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t7 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
  435. /usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7
  436. /usr/share/fsl/5.0/bin/fslmerge -t cope8 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8
  437. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
  438. printf '0.026734195 ' >> design.lcon
  439. /usr/share/fsl/5.0/bin/fslmerge -t varcope8 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope8
  440. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
  441. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  442. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  443. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  444. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  445. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  446. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  447. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  448. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  449. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t8 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
  450. /usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8
  451. /usr/share/fsl/5.0/bin/fslmerge -t cope9 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9
  452. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
  453. printf '0.02645030375 ' >> design.lcon
  454. /usr/share/fsl/5.0/bin/fslmerge -t varcope9 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope9
  455. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
  456. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  457. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  458. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  459. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  460. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  461. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  462. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  463. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  464. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t9 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
  465. /usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9
  466. /usr/share/fsl/5.0/bin/fslmerge -t cope10 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10
  467. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
  468. printf '0.09027827249999999 ' >> design.lcon
  469. /usr/share/fsl/5.0/bin/fslmerge -t varcope10 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope10
  470. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
  471. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 417 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  472. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 407 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  473. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 404 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  474. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 454 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  475. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 428 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  476. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 405 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  477. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 508 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  478. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 304 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  479. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t10 /data/project/studyforrest_ppa/sub-04/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-04/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
  480. /usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
  481. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>