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Branch: master
Branche Tagy
atlases
Adam Tyson 07fe831f37 Fix typo in atlas list 4 dní pred
LICENSE bbbe2705e7 Initial commit 4 rokov pred
README.md 07fe831f37 Fix typo in atlas list 4 dní pred
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA 2 rokov pred
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 mesiacov pred
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA 2 rokov pred
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 mesiacov pred
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA 2 rokov pred
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 mesiacov pred
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA 2 rokov pred
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 mesiacov pred
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA 2 rokov pred
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 mesiacov pred
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA 2 rokov pred
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 mesiacov pred
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA 2 rokov pred
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 mesiacov pred
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA 2 rokov pred
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas 3 mesiacov pred
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data 3 rokov pred
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas 4 mesiacov pred
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' 4 rokov pred
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 6 mesiacov pred
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 rokov pred
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 rokov pred
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 rokov pred
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 rokov pred
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 rokov pred
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 rokov pred
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 rokov pred
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 rokov pred
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 rokov pred
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 rokov pred
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 rokov pred
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 mesiacov pred
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 mesiacov pred
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA 3 rokov pred
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' 2 rokov pred
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 6 mesiacov pred
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 rokov pred
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 rokov pred
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 rokov pred
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok pred
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok pred
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok pred
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok pred
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok pred
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas 1 rok pred
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok pred
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update 5 mesiacov pred
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case 1 rok pred
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update 5 mesiacov pred
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 rokov pred
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 mesiacov pred
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution 4 rokov pred
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 mesiacov pred
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas 4 rokov pred
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 mesiacov pred
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 rokov pred
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 mesiacov pred
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' 4 rokov pred
last_versions.conf f97da9b305 Update 'last_versions.conf' 3 týždňov pred
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 rokov pred
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 rokov pred
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 rokov pred
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 rokov pred
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 rokov pred
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas 2 rokov pred
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas 6 mesiacov pred
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 6 mesiacov pred
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas 3 týždňov pred
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas 2 rokov pred
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 7 mesiacov pred
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish 5 mesiacov pred
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas 3 mesiacov pred
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas 3 rokov pred
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz 1 rok pred
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 2 mesiacov pred

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images Name in API
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT allen_mouse_10um, allen_mouse_25um, allen_mouse_100um
Allen Human Brain Atlas 500 micron Adult MRI allen_human_500um
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH mpin_zfish_1um
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT kim_mouse_10um, kim_mouse_25um, kim_mouse_50um, kim_mouse_100um
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT osten_mouse_10um, osten_mouse_25um, osten_mouse_50um, osten_mouse_100um
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM perens_lsfm_mouse_20um
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl allen_cord_20um
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM azba_zfish_4um
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI whs_sd_rat_39um
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl admba_3d_e11_5_mouse_16um, admba_3d_e13_5_mouse_16um, admba_3d_e15_5_mouse_16um, admba_3d_e18_5_mouse_16um, admba_3d_p14_mouse_16.752um, admba_3d_p28_mouse_16.752um, admba_3d_p4_mouse_16.752um, admba_3d_p56_mouse_25um
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM princeton_mouse_20um
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2) kim_dev_mouse_stp_10um, kim_dev_mouse_idisco_10um, kim_dev_mouse_mri_a0_10um, kim_dev_mouse_mri_adc_10um, kim_dev_mouse_mri_dwi_10um, kim_dev_mouse_mri_fa_10um, kim_dev_mouse_mri_mtr_10um, kim_dev_mouse_mri_t2_10um
Blind Mexican Cavefish Brain Atlas 2 micron 6 days post fertilisation IHC sju_cavefish_2um
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT allen_mouse_bluebrain_barrels_10um, allen_mouse_bluebrain_barrels_25um
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI unam_axolotl_40um
Prairie Vole Brain Atlas 25 micron Unknown LSFM prairie_vole_25um