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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-02 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname 3dcbcfbafa99
    8. 

  8. # machine  x86_64
    9. 

  9. # user     root
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /data/out
    13. 

  13. # subjectname sub-02
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1005371.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 985614.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 985262.508434, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 192641.314630, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 188353.253374, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 380994.568004, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 220453.080648, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 219008.859782, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 439461.940430, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 51292.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 522768.568004, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 889322.508434, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 872805.508434, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 871982.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1428003.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.732045, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.039778, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 20, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 20, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 40, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1373373.264927, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2017/01/14 12:37:57 
    37. 

  37. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/14 00:31:02 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2017/01/14 09:24:53 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2017/01/14 09:24:53 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      7616     7616.0  Left-Lateral-Ventricle            15.6687    13.0919     0.0000    86.0000    86.0000 
    81. 

  81.   2   5       245      245.1  Left-Inf-Lat-Vent                 26.4742    11.3418     8.0000    67.0000    59.0000 
    82. 

  82.   3   7     11590    11590.0  Left-Cerebellum-White-Matter      88.1263     7.0177    21.0000   108.0000    87.0000 
    83. 

  83.   4   8     44812    44812.4  Left-Cerebellum-Cortex            57.0405     9.4442     4.0000    92.0000    88.0000 
    84. 

  84.   5  10      6590     6589.5  Left-Thalamus-Proper              81.7455    11.0061    30.0000   111.0000    81.0000 
    85. 

  85.   6  11      3138     3138.1  Left-Caudate                      62.3735    10.9884    28.0000   100.0000    72.0000 
    86. 

  86.   7  12      5833     5832.5  Left-Putamen                      69.4233    10.0073    25.0000    95.0000    70.0000 
    87. 

  87.   8  13      1548     1547.7  Left-Pallidum                     91.6240     6.3800    66.0000   110.0000    44.0000 
    88. 

  88.   9  14       790      789.6  3rd-Ventricle                     25.7497    15.5216     1.0000    69.0000    68.0000 
    89. 

  89.  10  15      1900     1900.5  4th-Ventricle                     17.4583    10.9351     0.0000    54.0000    54.0000 
    90. 

  90.  11  16     19425    19424.9  Brain-Stem                        79.8191    10.4217     7.0000   117.0000   110.0000 
    91. 

  91.  12  17      3457     3456.7  Left-Hippocampus                  50.2941     9.9579    12.0000    90.0000    78.0000 
    92. 

  92.  13  18      1106     1106.4  Left-Amygdala                     50.6492     9.2159    31.0000    85.0000    54.0000 
    93. 

  93.  14  24       792      791.7  CSF                               31.3050    14.7085     2.0000    70.0000    68.0000 
    94. 

  94.  15  26       538      538.3  Left-Accumbens-area               56.9280     9.2881    39.0000    84.0000    45.0000 
    95. 

  95.  16  28      2997     2996.9  Left-VentralDC                    88.0763    11.9059    43.0000   117.0000    74.0000 
    96. 

  96.  17  30        87       87.4  Left-vessel                       54.6082    17.2038    19.0000    84.0000    65.0000 
    97. 

  97.  18  31      1257     1256.8  Left-choroid-plexus               52.0013    16.7700    11.0000   107.0000    96.0000 
    98. 

  98.  19  43      5541     5541.2  Right-Lateral-Ventricle           18.7757    12.9140     1.0000    81.0000    80.0000 
    99. 

  99.  20  44       391      390.8  Right-Inf-Lat-Vent                28.0122    11.2880     7.0000    66.0000    59.0000 
    100. 

  100.  21  46     12496    12495.7  Right-Cerebellum-White-Matter     88.8503     7.5270    40.0000   113.0000    73.0000 
    101. 

  101.  22  47     47318    47318.2  Right-Cerebellum-Cortex           56.7022     9.4862     7.0000    89.0000    82.0000 
    102. 

  102.  23  49      6324     6324.5  Right-Thalamus-Proper             80.5157    11.4411    37.0000   110.0000    73.0000 
    103. 

  103.  24  50      3228     3228.3  Right-Caudate                     61.4842    10.9521    17.0000   101.0000    84.0000 
    104. 

  104.  25  51      4926     4925.7  Right-Putamen                     70.9542     9.5850    27.0000    96.0000    69.0000 
    105. 

  105.  26  52      1501     1500.9  Right-Pallidum                    92.0358     6.1160    71.0000   111.0000    40.0000 
    106. 

  106.  27  53      3436     3436.0  Right-Hippocampus                 55.3646    10.4260    13.0000    99.0000    86.0000 
    107. 

  107.  28  54      1087     1087.3  Right-Amygdala                    52.8749     9.8567    27.0000    83.0000    56.0000 
    108. 

  108.  29  58       539      538.7  Right-Accumbens-area              58.6494    10.4137    41.0000    96.0000    55.0000 
    109. 

  109.  30  60      3348     3347.9  Right-VentralDC                   90.4462    11.7701    41.0000   114.0000    73.0000 
    110. 

  110.  31  62        67       67.2  Right-vessel                      58.3158    15.8267    31.0000    86.0000    55.0000 
    111. 

  111.  32  63      1619     1618.6  Right-choroid-plexus              52.1392    15.9748    11.0000   110.0000    99.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77      2527     2527.5  WM-hypointensities                77.4818    14.0867    15.0000   113.0000    98.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        21       20.9  non-WM-hypointensities            67.6071    11.8614    45.0000    92.0000    47.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       272      272.2  Optic-Chiasm                      75.2510    22.5047    16.0000   116.0000   100.0000 
    120. 

  120.  41 251       971      971.3  CC_Posterior                     115.2215     9.5796    68.0000   133.0000    65.0000 
    121. 

  121.  42 252       394      394.3  CC_Mid_Posterior                 105.5577     8.7444    79.0000   126.0000    47.0000 
    122. 

  122.  43 253       398      398.4  CC_Central                       105.4937     8.2672    80.0000   125.0000    45.0000 
    123. 

  123.  44 254       406      406.5  CC_Mid_Anterior                  105.9193     9.1633    80.0000   124.0000    44.0000 
    124. 

  124.  45 255       731      730.6  CC_Anterior                      105.3302    10.0332    58.0000   130.0000    72.0000 
    125.