# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-02 # sysname Linux # hostname 3dcbcfbafa99 # machine x86_64 # user root # anatomy_type volume # # SUBJECTS_DIR /data/out # subjectname sub-02 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1005371.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 985614.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 985262.508434, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 192641.314630, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 188353.253374, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 380994.568004, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 220453.080648, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 219008.859782, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 439461.940430, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 51292.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 522768.568004, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 889322.508434, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 872805.508434, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 871982.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1428003.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.732045, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.039778, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 20, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 20, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 40, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1373373.264927, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2017/01/14 12:37:57 # ColorTable /opt/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2013/05/14 00:31:02 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2017/01/14 09:24:53 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2017/01/14 09:24:53 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 7616 7616.0 Left-Lateral-Ventricle 15.6687 13.0919 0.0000 86.0000 86.0000 2 5 245 245.1 Left-Inf-Lat-Vent 26.4742 11.3418 8.0000 67.0000 59.0000 3 7 11590 11590.0 Left-Cerebellum-White-Matter 88.1263 7.0177 21.0000 108.0000 87.0000 4 8 44812 44812.4 Left-Cerebellum-Cortex 57.0405 9.4442 4.0000 92.0000 88.0000 5 10 6590 6589.5 Left-Thalamus-Proper 81.7455 11.0061 30.0000 111.0000 81.0000 6 11 3138 3138.1 Left-Caudate 62.3735 10.9884 28.0000 100.0000 72.0000 7 12 5833 5832.5 Left-Putamen 69.4233 10.0073 25.0000 95.0000 70.0000 8 13 1548 1547.7 Left-Pallidum 91.6240 6.3800 66.0000 110.0000 44.0000 9 14 790 789.6 3rd-Ventricle 25.7497 15.5216 1.0000 69.0000 68.0000 10 15 1900 1900.5 4th-Ventricle 17.4583 10.9351 0.0000 54.0000 54.0000 11 16 19425 19424.9 Brain-Stem 79.8191 10.4217 7.0000 117.0000 110.0000 12 17 3457 3456.7 Left-Hippocampus 50.2941 9.9579 12.0000 90.0000 78.0000 13 18 1106 1106.4 Left-Amygdala 50.6492 9.2159 31.0000 85.0000 54.0000 14 24 792 791.7 CSF 31.3050 14.7085 2.0000 70.0000 68.0000 15 26 538 538.3 Left-Accumbens-area 56.9280 9.2881 39.0000 84.0000 45.0000 16 28 2997 2996.9 Left-VentralDC 88.0763 11.9059 43.0000 117.0000 74.0000 17 30 87 87.4 Left-vessel 54.6082 17.2038 19.0000 84.0000 65.0000 18 31 1257 1256.8 Left-choroid-plexus 52.0013 16.7700 11.0000 107.0000 96.0000 19 43 5541 5541.2 Right-Lateral-Ventricle 18.7757 12.9140 1.0000 81.0000 80.0000 20 44 391 390.8 Right-Inf-Lat-Vent 28.0122 11.2880 7.0000 66.0000 59.0000 21 46 12496 12495.7 Right-Cerebellum-White-Matter 88.8503 7.5270 40.0000 113.0000 73.0000 22 47 47318 47318.2 Right-Cerebellum-Cortex 56.7022 9.4862 7.0000 89.0000 82.0000 23 49 6324 6324.5 Right-Thalamus-Proper 80.5157 11.4411 37.0000 110.0000 73.0000 24 50 3228 3228.3 Right-Caudate 61.4842 10.9521 17.0000 101.0000 84.0000 25 51 4926 4925.7 Right-Putamen 70.9542 9.5850 27.0000 96.0000 69.0000 26 52 1501 1500.9 Right-Pallidum 92.0358 6.1160 71.0000 111.0000 40.0000 27 53 3436 3436.0 Right-Hippocampus 55.3646 10.4260 13.0000 99.0000 86.0000 28 54 1087 1087.3 Right-Amygdala 52.8749 9.8567 27.0000 83.0000 56.0000 29 58 539 538.7 Right-Accumbens-area 58.6494 10.4137 41.0000 96.0000 55.0000 30 60 3348 3347.9 Right-VentralDC 90.4462 11.7701 41.0000 114.0000 73.0000 31 62 67 67.2 Right-vessel 58.3158 15.8267 31.0000 86.0000 55.0000 32 63 1619 1618.6 Right-choroid-plexus 52.1392 15.9748 11.0000 110.0000 99.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 2527 2527.5 WM-hypointensities 77.4818 14.0867 15.0000 113.0000 98.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 21 20.9 non-WM-hypointensities 67.6071 11.8614 45.0000 92.0000 47.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 272 272.2 Optic-Chiasm 75.2510 22.5047 16.0000 116.0000 100.0000 41 251 971 971.3 CC_Posterior 115.2215 9.5796 68.0000 133.0000 65.0000 42 252 394 394.3 CC_Mid_Posterior 105.5577 8.7444 79.0000 126.0000 47.0000 43 253 398 398.4 CC_Central 105.4937 8.2672 80.0000 125.0000 45.0000 44 254 406 406.5 CC_Mid_Anterior 105.9193 9.1633 80.0000 124.0000 44.0000 45 255 731 730.6 CC_Anterior 105.3302 10.0332 58.0000 130.0000 72.0000