We use cookies to ensure you get the best experience on our website
Startseite Erkunden Hilfe News
Registrieren Anmelden
bids_apps_test_data
/
ds114_test1_freesurfer
4
0
Fork 0
Dateien Issues 0 Pull-Requests 0 Wiki
Struktur: 9e94fc2d76
Branches Tags
ds114_test1_...
/
sub-01
/
stats
/
aseg.stats

aseg.stats 9.4 KB
Verlauf Download

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124 
  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-01 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname 0cefee4ac0df
    8. 

  8. # machine  x86_64
    9. 

  9. # user     root
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /data/out
    13. 

  13. # subjectname sub-01
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 820820.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 798577.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 798001.791711, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 159824.253600, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 155819.536078, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 315643.789678, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 173529.730814, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 174621.271219, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 348151.002032, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 45161.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 429729.789678, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 728826.791711, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 709847.791711, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 709346.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1217465.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.710923, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.054462, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 38, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 31, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 69, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1154584.239427, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2017/01/14 12:27:33 
    37. 

  37. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/14 00:31:02 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2017/01/14 09:19:36 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2017/01/14 09:19:36 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      8364     8364.1  Left-Lateral-Ventricle            15.4449    12.3000     0.0000    92.0000    92.0000 
    81. 

  81.   2   5       243      242.6  Left-Inf-Lat-Vent                 22.8396     9.1872     5.0000    54.0000    49.0000 
    82. 

  82.   3   7     10406    10405.5  Left-Cerebellum-White-Matter      87.3989     7.3602    32.0000   109.0000    77.0000 
    83. 

  83.   4   8     35079    35079.1  Left-Cerebellum-Cortex            57.0173     9.2152    11.0000    89.0000    78.0000 
    84. 

  84.   5  10      5248     5247.8  Left-Thalamus-Proper              78.4381    10.9496    41.0000   103.0000    62.0000 
    85. 

  85.   6  11      2880     2880.1  Left-Caudate                      59.4413    10.6513    28.0000   108.0000    80.0000 
    86. 

  86.   7  12      4295     4295.5  Left-Putamen                      69.7275     9.2170    41.0000    94.0000    53.0000 
    87. 

  87.   8  13      1649     1649.2  Left-Pallidum                     89.0214     7.5002    58.0000   110.0000    52.0000 
    88. 

  88.   9  14      1151     1151.1  3rd-Ventricle                     20.2989    14.7758     1.0000    64.0000    63.0000 
    89. 

  89.  10  15      1290     1290.4  4th-Ventricle                     18.8713    10.5797     2.0000    53.0000    51.0000 
    90. 

  90.  11  16     15873    15873.0  Brain-Stem                        77.4102     9.9084     6.0000   113.0000   107.0000 
    91. 

  91.  12  17      2936     2936.0  Left-Hippocampus                  46.9971    11.0116    10.0000    85.0000    75.0000 
    92. 

  92.  13  18      1001     1001.3  Left-Amygdala                     51.3679     9.7228    29.0000    79.0000    50.0000 
    93. 

  93.  14  24       977      977.4  CSF                               26.3323    14.4133     1.0000    66.0000    65.0000 
    94. 

  94.  15  26       355      354.5  Left-Accumbens-area               57.4716     8.3136    35.0000    83.0000    48.0000 
    95. 

  95.  16  28      2723     2723.1  Left-VentralDC                    90.2155    11.5246    42.0000   125.0000    83.0000 
    96. 

  96.  17  30        53       52.5  Left-vessel                       61.1404     5.8139    46.0000    76.0000    30.0000 
    97. 

  97.  18  31      1044     1044.4  Left-choroid-plexus               52.4066    15.4357    11.0000    91.0000    80.0000 
    98. 

  98.  19  43      7810     7809.5  Right-Lateral-Ventricle           15.7212    12.4327     0.0000    73.0000    73.0000 
    99. 

  99.  20  44       181      181.2  Right-Inf-Lat-Vent                23.8699     8.3646    11.0000    61.0000    50.0000 
    100. 

  100.  21  46     10669    10669.2  Right-Cerebellum-White-Matter     86.8211     7.3995    23.0000   109.0000    86.0000 
    101. 

  101.  22  47     35515    35514.8  Right-Cerebellum-Cortex           56.8372     9.2901     9.0000    89.0000    80.0000 
    102. 

  102.  23  49      4977     4976.9  Right-Thalamus-Proper             76.7547    11.5378    31.0000   104.0000    73.0000 
    103. 

  103.  24  50      3060     3060.4  Right-Caudate                     60.5131    11.3599    24.0000   106.0000    82.0000 
    104. 

  104.  25  51      4846     4845.9  Right-Putamen                     70.3365     9.0379    44.0000    94.0000    50.0000 
    105. 

  105.  26  52      1483     1483.1  Right-Pallidum                    92.5756     7.3420    63.0000   113.0000    50.0000 
    106. 

  106.  27  53      3007     3006.9  Right-Hippocampus                 50.7364    10.6546     9.0000    87.0000    78.0000 
    107. 

  107.  28  54      1504     1504.0  Right-Amygdala                    53.6852     9.0920    20.0000    78.0000    58.0000 
    108. 

  108.  29  58       477      476.6  Right-Accumbens-area              60.8033     9.6647    29.0000    95.0000    66.0000 
    109. 

  109.  30  60      2898     2898.0  Right-VentralDC                   85.1815    13.3028    12.0000   121.0000   109.0000 
    110. 

  110.  31  62        66       66.0  Right-vessel                      56.0000    12.0638    33.0000    83.0000    50.0000 
    111. 

  111.  32  63      1431     1431.1  Right-choroid-plexus              51.8235    15.5150    12.0000    98.0000    86.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77      2036     2035.6  WM-hypointensities                77.4115    14.0681    16.0000   112.0000    96.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        62       61.5  non-WM-hypointensities            69.0556    11.7158    39.0000    89.0000    50.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       266      266.0  Optic-Chiasm                      73.0116    21.4348    14.0000   113.0000    99.0000 
    120. 

  120.  41 251       646      646.1  CC_Posterior                     108.9019    11.0888    68.0000   129.0000    61.0000 
    121. 

  121.  42 252       175      175.3  CC_Mid_Posterior                 103.1765    12.4260    79.0000   128.0000    49.0000 
    122. 

  122.  43 253       220      220.1  CC_Central                       107.0273    11.6042    74.0000   125.0000    51.0000 
    123. 

  123.  44 254       264      263.6  CC_Mid_Anterior                  105.2351    11.5031    64.0000   123.0000    59.0000 
    124. 

  124.  45 255       466      465.8  CC_Anterior                      106.1649    14.0136    46.0000   131.0000    85.0000 
    125.