# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-01 # sysname Linux # hostname 0cefee4ac0df # machine x86_64 # user root # anatomy_type volume # # SUBJECTS_DIR /data/out # subjectname sub-01 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 820820.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 798577.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 798001.791711, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 159824.253600, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 155819.536078, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 315643.789678, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 173529.730814, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 174621.271219, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 348151.002032, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 45161.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 429729.789678, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 728826.791711, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 709847.791711, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 709346.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1217465.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.710923, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.054462, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 38, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 31, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 69, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1154584.239427, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2017/01/14 12:27:33 # ColorTable /opt/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2013/05/14 00:31:02 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2017/01/14 09:19:36 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2017/01/14 09:19:36 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 8364 8364.1 Left-Lateral-Ventricle 15.4449 12.3000 0.0000 92.0000 92.0000 2 5 243 242.6 Left-Inf-Lat-Vent 22.8396 9.1872 5.0000 54.0000 49.0000 3 7 10406 10405.5 Left-Cerebellum-White-Matter 87.3989 7.3602 32.0000 109.0000 77.0000 4 8 35079 35079.1 Left-Cerebellum-Cortex 57.0173 9.2152 11.0000 89.0000 78.0000 5 10 5248 5247.8 Left-Thalamus-Proper 78.4381 10.9496 41.0000 103.0000 62.0000 6 11 2880 2880.1 Left-Caudate 59.4413 10.6513 28.0000 108.0000 80.0000 7 12 4295 4295.5 Left-Putamen 69.7275 9.2170 41.0000 94.0000 53.0000 8 13 1649 1649.2 Left-Pallidum 89.0214 7.5002 58.0000 110.0000 52.0000 9 14 1151 1151.1 3rd-Ventricle 20.2989 14.7758 1.0000 64.0000 63.0000 10 15 1290 1290.4 4th-Ventricle 18.8713 10.5797 2.0000 53.0000 51.0000 11 16 15873 15873.0 Brain-Stem 77.4102 9.9084 6.0000 113.0000 107.0000 12 17 2936 2936.0 Left-Hippocampus 46.9971 11.0116 10.0000 85.0000 75.0000 13 18 1001 1001.3 Left-Amygdala 51.3679 9.7228 29.0000 79.0000 50.0000 14 24 977 977.4 CSF 26.3323 14.4133 1.0000 66.0000 65.0000 15 26 355 354.5 Left-Accumbens-area 57.4716 8.3136 35.0000 83.0000 48.0000 16 28 2723 2723.1 Left-VentralDC 90.2155 11.5246 42.0000 125.0000 83.0000 17 30 53 52.5 Left-vessel 61.1404 5.8139 46.0000 76.0000 30.0000 18 31 1044 1044.4 Left-choroid-plexus 52.4066 15.4357 11.0000 91.0000 80.0000 19 43 7810 7809.5 Right-Lateral-Ventricle 15.7212 12.4327 0.0000 73.0000 73.0000 20 44 181 181.2 Right-Inf-Lat-Vent 23.8699 8.3646 11.0000 61.0000 50.0000 21 46 10669 10669.2 Right-Cerebellum-White-Matter 86.8211 7.3995 23.0000 109.0000 86.0000 22 47 35515 35514.8 Right-Cerebellum-Cortex 56.8372 9.2901 9.0000 89.0000 80.0000 23 49 4977 4976.9 Right-Thalamus-Proper 76.7547 11.5378 31.0000 104.0000 73.0000 24 50 3060 3060.4 Right-Caudate 60.5131 11.3599 24.0000 106.0000 82.0000 25 51 4846 4845.9 Right-Putamen 70.3365 9.0379 44.0000 94.0000 50.0000 26 52 1483 1483.1 Right-Pallidum 92.5756 7.3420 63.0000 113.0000 50.0000 27 53 3007 3006.9 Right-Hippocampus 50.7364 10.6546 9.0000 87.0000 78.0000 28 54 1504 1504.0 Right-Amygdala 53.6852 9.0920 20.0000 78.0000 58.0000 29 58 477 476.6 Right-Accumbens-area 60.8033 9.6647 29.0000 95.0000 66.0000 30 60 2898 2898.0 Right-VentralDC 85.1815 13.3028 12.0000 121.0000 109.0000 31 62 66 66.0 Right-vessel 56.0000 12.0638 33.0000 83.0000 50.0000 32 63 1431 1431.1 Right-choroid-plexus 51.8235 15.5150 12.0000 98.0000 86.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 2036 2035.6 WM-hypointensities 77.4115 14.0681 16.0000 112.0000 96.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 62 61.5 non-WM-hypointensities 69.0556 11.7158 39.0000 89.0000 50.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 266 266.0 Optic-Chiasm 73.0116 21.4348 14.0000 113.0000 99.0000 41 251 646 646.1 CC_Posterior 108.9019 11.0888 68.0000 129.0000 61.0000 42 252 175 175.3 CC_Mid_Posterior 103.1765 12.4260 79.0000 128.0000 49.0000 43 253 220 220.1 CC_Central 107.0273 11.6042 74.0000 125.0000 51.0000 44 254 264 263.6 CC_Mid_Anterior 105.2351 11.5031 64.0000 123.0000 59.0000 45 255 466 465.8 CC_Anterior 106.1649 14.0136 46.0000 131.0000 85.0000