processing_pipelines.yml 3.0 KB

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  1. # relative or absolute location of the YML file defining movement correction pipes
  2. movement_correction_pipes: ../movement_correction_pipes.yml
  3. # relative or absolute location of the YML file defining compoenent segmentation pipes
  4. component_segmentation_pipes: ../component_segmentation_pipes.yml
  5. # pipeline definitions using the names of pipes defined in the YML files above
  6. pipeline1: # arbitrary but unique name
  7. shift_correction: none_none
  8. motion_correction: none_none
  9. component_segmentation: cnmf_defaults
  10. pipeline2: # arbitrary but unique name
  11. shift_correction: normcorre_none_defaults
  12. motion_correction: none_none
  13. component_segmentation: cnmf_defaults
  14. pipeline3: # arbitrary but unique name
  15. shift_correction: none_none
  16. motion_correction: normcorre_none_defaults
  17. component_segmentation: cnmf_defaults
  18. pipeline4: # arbitrary but unique name
  19. shift_correction: normcorre_none_defaults
  20. motion_correction: normcorre_none_defaults
  21. component_segmentation: cnmf_defaults
  22. pipeline5: # arbitrary but unique name
  23. shift_correction: normcorre_none_defaults
  24. motion_correction: normcorre_normcorre_defaults
  25. component_segmentation: cnmf_defaults
  26. pipeline5a: # arbitrary but unique name
  27. shift_correction: normcorre_none_defaults
  28. motion_correction: normcorre_normcorre_antennal_data
  29. component_segmentation: cnmf_defaults
  30. pipeline1_custom_cnmf: # arbitrary but unique name
  31. shift_correction: none_none
  32. motion_correction: none_none
  33. component_segmentation: cnmf_antennal_data
  34. pipeline2_custom_cnmf: # arbitrary but unique name
  35. shift_correction: normcorre_none_defaults
  36. motion_correction: none_none
  37. component_segmentation: cnmf_antennal_data
  38. pipeline4_custom_cnmf: # arbitrary but unique name
  39. shift_correction: normcorre_none_defaults
  40. motion_correction: normcorre_none_defaults
  41. component_segmentation: cnmf_antennal_data
  42. pipeline5_custom_cnmf: # arbitrary but unique name
  43. shift_correction: normcorre_none_defaults
  44. motion_correction: normcorre_normcorre_defaults
  45. component_segmentation: cnmf_antennal_data
  46. pipeline5a_custom_cnmf: # arbitrary but unique name
  47. shift_correction: normcorre_none_defaults
  48. motion_correction: normcorre_normcorre_antennal_data
  49. component_segmentation: cnmf_antennal_data
  50. pipeline2_custom_cnmf_1: # arbitrary but unique name
  51. shift_correction: normcorre_none_defaults
  52. motion_correction: none_none
  53. component_segmentation: cnmf_antennal_data_gnb2
  54. pipeline2_custom_cnmf_2: # arbitrary but unique name
  55. shift_correction: normcorre_none_defaults
  56. motion_correction: none_none
  57. component_segmentation: cnmf_antennal_data_p0
  58. pipeline2_custom_cnmf_3: # arbitrary but unique name
  59. shift_correction: normcorre_none_defaults
  60. motion_correction: none_none
  61. component_segmentation: cnmf_antennal_data_gnb2_p0
  62. pipeline2_rnmf_defaults:
  63. shift_correction: normcorre_none_defaults
  64. motion_correction: none_none
  65. component_segmentation: rnmf_defaults
  66. pipeline2_rnmf_maxCount_50:
  67. shift_correction: normcorre_none_defaults
  68. motion_correction: none_none
  69. component_segmentation: rnmf_maxCount_50