pyview_test_data/Or47a_test/progs/pipelines_settings/movement_correction_pipes.yml

none_none: # this pipe results in no movement correction
  affine_plugin: none
  non-affine_plugin: none

normcorre_none_defaults: # this pipe results only in affine correction using NoRMCorre
  affine_plugin: normcorre
  affine_params:
    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative.
  non-affine_plugin: none

normcorre_normcorre_defaults: # this pipe leads to affine correction followed by non-affine correction, both using NoRMCorre
  affine_plugin: normcorre
  affine_params:
    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative.
  non-affine_plugin: normcorre
  non-affine_params:
    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative.

normcorre_normcorre_antennal_data: # this pipe leads to affine correction followed by non-affine correction, both using NoRMCorre
  affine_plugin: normcorre
  affine_params:
    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative.
  non-affine_plugin: normcorre
  non-affine_params:
    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative.
    strides: (15, 15)
    overlaps: (5, 5)
    num_frames_split: 200
#normcorre_none_myparams1:
#  affine_plugin: normcorre
#  affine_params:
#    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative
#    # add further parameters here
#    # for parameter definition see https://gitlab.inf.uni-konstanz.de/ag-galizia/view/-/wikis/NoRMCorre
#  non-affine_plugin: normcorre
#  non-affine_params:
#    nonneg_movie: False  # otherwise, normcorre will by default try to make movies non negative.
#    # add further parameters here
#    # for parameter definition see https://gitlab.inf.uni-konstanz.de/ag-galizia/view/-/wikis/NoRMCorre


elastix_none_basic:
  affine_plugin: elastix
  non-affine_plugin: none