none_none: # this pipe results in no movement correction affine_plugin: none non-affine_plugin: none normcorre_none_defaults: # this pipe results only in affine correction using NoRMCorre affine_plugin: normcorre affine_params: nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative. non-affine_plugin: none normcorre_normcorre_defaults: # this pipe leads to affine correction followed by non-affine correction, both using NoRMCorre affine_plugin: normcorre affine_params: nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative. non-affine_plugin: normcorre non-affine_params: nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative. normcorre_normcorre_antennal_data: # this pipe leads to affine correction followed by non-affine correction, both using NoRMCorre affine_plugin: normcorre affine_params: nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative. non-affine_plugin: normcorre non-affine_params: nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative. strides: (15, 15) overlaps: (5, 5) num_frames_split: 200 #normcorre_none_myparams1: # affine_plugin: normcorre # affine_params: # nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative # # add further parameters here # # for parameter definition see https://gitlab.inf.uni-konstanz.de/ag-galizia/view/-/wikis/NoRMCorre # non-affine_plugin: normcorre # non-affine_params: # nonneg_movie: False # otherwise, normcorre will by default try to make movies non negative. # # add further parameters here # # for parameter definition see https://gitlab.inf.uni-konstanz.de/ag-galizia/view/-/wikis/NoRMCorre elastix_none_basic: affine_plugin: elastix non-affine_plugin: none