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ag_galizia
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pyview
DOI
10.12751/g-node.ezh5w2
3
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Puu: 62da18c9ba
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pyview
Ajayrama Kumaraswamy 62da18c9ba split conda files into linux and mac+win to add glibc dependency 1 vuosi sitten
Notebooks 8a84333ea7 moved code to github 2 vuotta sitten
VIEWtemplates 422cb63d73 localCTV: added sample file to VIEWtemplates 2 vuotta sitten
log2list_examples 77ae1fbd77 added better help to beginning of create_measurement_list_lif.py 1 vuosi sitten
old_conda_files bece144f7c setup install ILTIS 1.5; tests passing on Linux for conda envs 3.9 and 3.10 1 vuosi sitten
synthetic_data 6eba26b8e9 Update to TOC in VIEW_Tutorial.pdf 1 vuosi sitten
tests 61f1ee0ddc changes to avoid future warning from pandas 1 vuosi sitten
utility_scripts b3c5db08fc minor correction in setup_testing.py 1 vuosi sitten
view b1598faa31 added LE_LoadExp 665,667, 676 to direct load; minor bug fix 1 vuosi sitten
.gitignore 8a84333ea7 moved code to github 2 vuotta sitten
LICENSE-BSD-3-CLAUSE 0df9ed2d37 updated README; changes license to BSD-3-CLAUSE 2 vuotta sitten
README.md 7b52e13ef6 Readme for Tutorial changes 1 vuosi sitten
conda_py310_dev_linux.yml 62da18c9ba split conda files into linux and mac+win to add glibc dependency 1 vuosi sitten
conda_py310_dev_mac_win.yml 62da18c9ba split conda files into linux and mac+win to add glibc dependency 1 vuosi sitten
conda_py310_linux.yml 62da18c9ba split conda files into linux and mac+win to add glibc dependency 1 vuosi sitten
conda_py310_mac_win.yml 62da18c9ba split conda files into linux and mac+win to add glibc dependency 1 vuosi sitten
setup.py bece144f7c setup install ILTIS 1.5; tests passing on Linux for conda envs 3.9 and 3.10 1 vuosi sitten

README.md

Welcome to the repository containing the python implementation of PyView

PyView is a general purpose tool to analyze calcium imaging data of responses to sensory stimuli. Its philosophy is two-dimensional.

License

BSD 3 Clause, see file LICENSE-BSD-3-CLAUSE

Installation and Usage

Please consult the wiki

Issues

If you find bugs, have questions about its usage, or have ideas for new features, please check the Issues tab for related Issues and if you are convinced, create a new Issue. For bugs and errors, please paste the error you have encountered and clearly state the steps to reproduce the error. Thank You!

Contributing

Please consult this page on the wiki for a Developer Guide. Pull requests corresponding to well documented issues in this repository are welcome!

Tutorial

Copy the folder "synthetic_data" into a place of your system where you keep data. (If you installed as a developer, the folder is in the program tree. If you installed as a simple user, you should download the folder from the github location). Open the file VIEW_Tutorial.pdf. This will guide you through a hands-on quick tour using a synthetic data set, showing you how to use VIEW, ILTIS and off-line analysis.

Testing

TODO