AFIDS_afni_warps

This repository contains all the transformations to align templates among all common macaque template spaces. These transformations were computed using the @animal_warper program from the AFNI brain imaging analysis package.

The repository was created primarily for supporting the AFIDS-macaca project, an effort to assess the creation and transformation of standardized anatomical region coordinates. This animal_warper based set of transformations mirrors the RheMap project.

Each template was aligned to all the others. Transformations were arbitrarily chosen to pick only one as the base template and the other as an input template. The output directories contain the affine, the nonlinear and the composite transformations for both directions of these transformations. The calls to @animal_warper are using the default options with no optimization for any specific case unless the alignment failed completely.