IntracorticalSpellingALS/scripts_for_figures/README.md

---

title: "KIAP Paper figure scripts" author:

- Jonas B. Zimmermann

date: 18 April 2020

KIAP Paper figure scripts

Purpose

This repository contains Python scripts to reproduce the figures published in the KIAP paper.

Prerequisites

1. A copy of the KIAP BCI dataset. By default, these data should be in a folder ../data relative to this file. The location can be changed in basics.py.
2. The output folder (by default ../out) has to exist and be writable.
3. Install conda (e.g. https://docs.conda.io/en/latest/miniconda.html)
4. Open a terminal and navigate to the folder containing this file.
5. Create a conda environment: conda env create -f=environment.yml
6. Activate the new environment: conda activate kiap_paper
7. Run ipython

8. From within IPython, run the figure producing scripts:

   run plot_figures_part_A.py run plot_figure_3A.py run plot_figure_4.py

   • plot_figures_part_A.py contains functions to produce figures 2, 3B, and S2.
   • plot_figures_part_B.py contains functions to produce figure 3A.
   • plot_figures_part_C.py contains functions to produce figure 4.

The figures will be saved to the output directory, as eps, pdf, and svg files.