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- >>>>> started run at 30/11/2020 13:27:11{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/6'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/6', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/6', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 4.91 sec.
- 4000 frames of binary, time 6.71 sec.
- 6000 frames of binary, time 8.50 sec.
- 8000 frames of binary, time 10.04 sec.
- 10000 frames of binary, time 11.59 sec.
- time 12.75 sec. Wrote 10852 frames per binary for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- NOTE: not registered / registration forced with ops['do_registration']>1
- (no previous offsets to delete)
- ----------- REGISTRATION
- registering 10852 frames
- Reference frame, 20.52 sec.
- Registered 2000/10852 in 92.22s
- Registered 4000/10852 in 228.57s
- Registered 6000/10852 in 385.99s
- Registered 8000/10852 in 518.02s
- Registered 10000/10852 in 636.19s
- ----------- Total 700.05 sec
- Registration metrics, 90.05 sec.
- NOTE: applying default C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- ROI DETECTION
- Binning movie in chunks of length 21
- Binned movie [483,502,500], 13.78 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=504.64
- 1000 ROIs, score=30.01
- 2000 ROIs, score=13.59
- Found 2916 ROIs, 31.32 sec
- After removing overlaps, 2396 ROIs remain
- Masks made in 36.98 sec.
- ----------- Total 83.44 sec.
- ----------- EXTRACTION
- Extracted fluorescence from 2396 ROIs in 10852 frames, 193.79 sec.
- added enhanced mean image
- ----------- Total 202.72 sec.
- ----------- CLASSIFICATION
- ----------- Total 0.03 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 1076.95 sec (can open in GUI).
- total = 1090.39 sec.
- TOTAL RUNTIME 1090.39 sec
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