| 1234567891011121314151617181920212223242526272829303132333435363738394041 |
- >>>>> started run at 30/11/2020 12:14:25{'data_path': ['H:/Sleep/20201028_GCaMP6f_8238_awake/5'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201028_GCaMP6f_8238_awake/5', 'fast_disk': 'H:/Sleep/20201028_GCaMP6f_8238_awake/5', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 7.12 sec.
- 4000 frames of binary, time 9.52 sec.
- 6000 frames of binary, time 12.29 sec.
- 8000 frames of binary, time 14.50 sec.
- 10000 frames of binary, time 16.48 sec.
- 12000 frames of binary, time 18.43 sec.
- time 19.09 sec. Wrote 12151 tiff frames to binaries for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- ----------- REGISTRATION
- registering 12151 frames
- Reference frame, 10.82 sec.
- 2500/12151 frames, 54.85 sec.
- 5000/12151 frames, 127.15 sec.
- 7500/12151 frames, 203.33 sec.
- 10000/12151 frames, 273.29 sec.
- 12151/12151 frames, 342.72 sec.
- 12151/12151 frames, 342.79 sec.
- bad frames file path: H:\Sleep\20201028_GCaMP6f_8238_awake\5\bad_frames.npy
- ----------- Total 354.05 sec
- Registration metrics, 65.15 sec.
- ----------- ROI DETECTION AND EXTRACTION
- Binning movie in chunks of length 21
- Binned movie [577,502,484], 11.97 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=514.10
- 1000 ROIs, score=27.05
- 2000 ROIs, score=13.62
- Found 2973 ROIs, 61.11 sec
- After removing overlaps, 1974 ROIs remain
- Masks made in 24.89 sec.
- Extracted fluorescence from 1974 ROIs in 12151 frames, 144.26 sec.
- NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- Total 274.18 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 693.96 sec (can open in GUI).
- total = 339.91 sec.
- TOTAL RUNTIME 340.38 sec
|
