>>>>> started run at 30/11/2020 12:14:25{'data_path': ['H:/Sleep/20201028_GCaMP6f_8238_awake/5'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201028_GCaMP6f_8238_awake/5', 'fast_disk': 'H:/Sleep/20201028_GCaMP6f_8238_awake/5', 'input_format': 'tif'}

tif

** Found 1 tifs - converting to binary **

2000 frames of binary, time 7.12 sec.

4000 frames of binary, time 9.52 sec.

6000 frames of binary, time 12.29 sec.

8000 frames of binary, time 14.50 sec.

10000 frames of binary, time 16.48 sec.

12000 frames of binary, time 18.43 sec.

time 19.09 sec. Wrote 12151 tiff frames to binaries for 1 planes

>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<

----------- REGISTRATION

registering 12151 frames

Reference frame, 10.82 sec.

2500/12151 frames, 54.85 sec.

5000/12151 frames, 127.15 sec.

7500/12151 frames, 203.33 sec.

10000/12151 frames, 273.29 sec.

12151/12151 frames, 342.72 sec.

12151/12151 frames, 342.79 sec.

bad frames file path: H:\Sleep\20201028_GCaMP6f_8238_awake\5\bad_frames.npy

----------- Total 354.05 sec

Registration metrics, 65.15 sec.

----------- ROI DETECTION AND EXTRACTION

Binning movie in chunks of length 21

Binned movie [577,502,484], 11.97 sec.

NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00 

0 ROIs, score=514.10

1000 ROIs, score=27.05

2000 ROIs, score=13.62

Found 2973 ROIs, 61.11 sec

After removing overlaps, 1974 ROIs remain

Masks made in 24.89 sec.

Extracted fluorescence from 1974 ROIs in 12151 frames, 144.26 sec.

NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy

----------- Total 274.18 sec.

WARNING: skipping spike detection (ops['spikedetect']=False)

Plane 0 processed in 693.96 sec (can open in GUI).

total = 339.91 sec.

TOTAL RUNTIME 340.38 sec