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- >>>>> started run at 30/11/2020 12:50:41{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/2'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/2', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/2', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 4.44 sec.
- 4000 frames of binary, time 6.24 sec.
- 6000 frames of binary, time 8.04 sec.
- 8000 frames of binary, time 9.83 sec.
- 10000 frames of binary, time 11.64 sec.
- time 13.08 sec. Wrote 11079 tiff frames to binaries for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- ----------- REGISTRATION
- registering 11079 frames
- Reference frame, 8.90 sec.
- 2500/11079 frames, 46.67 sec.
- 5000/11079 frames, 98.17 sec.
- 7500/11079 frames, 150.43 sec.
- 10000/11079 frames, 203.51 sec.
- 11079/11079 frames, 226.64 sec.
- bad frames file path: H:\Sleep\20201029_GCaMP6f_8235_awake\2\bad_frames.npy
- ----------- Total 235.90 sec
- Registration metrics, 52.29 sec.
- ----------- ROI DETECTION AND EXTRACTION
- Binning movie in chunks of length 21
- Binned movie [527,498,492], 8.29 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=668.12
- 1000 ROIs, score=28.05
- 2000 ROIs, score=14.75
- 3000 ROIs, score=10.11
- Found 3073 ROIs, 61.24 sec
- After removing overlaps, 2261 ROIs remain
- Masks made in 25.84 sec.
- Extracted fluorescence from 2261 ROIs in 11079 frames, 145.11 sec.
- NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- Total 268.50 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 557.29 sec (can open in GUI).
- total = 321.39 sec.
- TOTAL RUNTIME 321.75 sec
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