>>>>> started run at 30/11/2020 12:50:41{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/2'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/2', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/2', 'input_format': 'tif'}

tif

** Found 1 tifs - converting to binary **

2000 frames of binary, time 4.44 sec.

4000 frames of binary, time 6.24 sec.

6000 frames of binary, time 8.04 sec.

8000 frames of binary, time 9.83 sec.

10000 frames of binary, time 11.64 sec.

time 13.08 sec. Wrote 11079 tiff frames to binaries for 1 planes

>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<

----------- REGISTRATION

registering 11079 frames

Reference frame, 8.90 sec.

2500/11079 frames, 46.67 sec.

5000/11079 frames, 98.17 sec.

7500/11079 frames, 150.43 sec.

10000/11079 frames, 203.51 sec.

11079/11079 frames, 226.64 sec.

bad frames file path: H:\Sleep\20201029_GCaMP6f_8235_awake\2\bad_frames.npy

----------- Total 235.90 sec

Registration metrics, 52.29 sec.

----------- ROI DETECTION AND EXTRACTION

Binning movie in chunks of length 21

Binned movie [527,498,492], 8.29 sec.

NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00 

0 ROIs, score=668.12

1000 ROIs, score=28.05

2000 ROIs, score=14.75

3000 ROIs, score=10.11

Found 3073 ROIs, 61.24 sec

After removing overlaps, 2261 ROIs remain

Masks made in 25.84 sec.

Extracted fluorescence from 2261 ROIs in 11079 frames, 145.11 sec.

NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy

----------- Total 268.50 sec.

WARNING: skipping spike detection (ops['spikedetect']=False)

Plane 0 processed in 557.29 sec (can open in GUI).

total = 321.39 sec.

TOTAL RUNTIME 321.75 sec