We use cookies to ensure you get the best experience on our website
ホーム エクスプローラ ヘルプ News
登録 サインイン
NeuralEnsemble
/
ephy_testing_data
9
6
フォーク 15
ファイル 課題 10 プルリクエスト 4 Wiki

Collection of testing data in various electrophysiology file formats.

ツリー: 56ff9cd024
ブランチ タグ
ephy_testing...
sprenger 56ff9cd024 gin commit from nit-ope-de04 2 年 前
alphaomega 428590b417 Better describe test dataset 2 年 前
asciisignal e5dbc29dfd gin commit from hambach37 3 年 前
asciispiketrain e5dbc29dfd gin commit from hambach37 3 年 前
axograph e5dbc29dfd gin commit from hambach37 3 年 前
axon e5dbc29dfd gin commit from hambach37 3 年 前
axona fcb3f31bfd gin commit from nit-ope-de04 2 年 前
bci2000 e5dbc29dfd gin commit from hambach37 3 年 前
biocam 651d5c8cc0 gin commit from bs-mbpr415.d.ethz.ch 2 年 前
blackrock e5dbc29dfd gin commit from hambach37 3 年 前
brainvision e5dbc29dfd gin commit from hambach37 3 年 前
brainwaredam e5dbc29dfd gin commit from hambach37 3 年 前
brainwaref32 e5dbc29dfd gin commit from hambach37 3 年 前
brainwaresrc e5dbc29dfd gin commit from hambach37 3 年 前
cellexplorer 56ff9cd024 gin commit from nit-ope-de04 2 年 前
edf 8f58275392 gin commit from nit-ope-de04 2 年 前
elan e5dbc29dfd gin commit from hambach37 3 年 前
elphy e5dbc29dfd gin commit from hambach37 3 年 前
igor e5dbc29dfd gin commit from hambach37 3 年 前
intan e5dbc29dfd gin commit from hambach37 3 年 前
klustakwik e5dbc29dfd gin commit from hambach37 3 年 前
kwik e5dbc29dfd gin commit from hambach37 3 年 前
maxwell 167fd83cd9 gin commit from nit-ope-de04 3 年 前
mearec e5dbc29dfd gin commit from hambach37 3 年 前
micromed e5dbc29dfd gin commit from hambach37 3 年 前
neohdf5 e5dbc29dfd gin commit from hambach37 3 年 前
nest e5dbc29dfd gin commit from hambach37 3 年 前
neuralynx bd4dc856d6 gin commit from nit-ope-de04 2 年 前
neuroexplorer e5dbc29dfd gin commit from hambach37 3 年 前
neuroscope 9e11e4dd65 gin commit from nit-ope-de04 2 年 前
neuroshare e5dbc29dfd gin commit from hambach37 3 年 前
nix e5dbc29dfd gin commit from hambach37 3 年 前
nwb 3bbead7d3e locking nwb file 2 年 前
openephys e5dbc29dfd gin commit from hambach37 3 年 前
openephysbinary d65f468203 gin commit from nit-ope-de04 2 年 前
phy e5dbc29dfd gin commit from hambach37 3 年 前
plexon e5dbc29dfd gin commit from hambach37 3 年 前
rawbinarysignal e5dbc29dfd gin commit from hambach37 3 年 前
rawmcs e5dbc29dfd gin commit from hambach37 3 年 前
spike2 9a6519c232 gin commit from samuel-pc 3 年 前
spikegadgets da4edad8f0 gin commit from nit-ope-de04 3 年 前
spikeglx 2a98caf770 gin commit from samuel-pc 2 年 前
spykingcircus e5dbc29dfd gin commit from hambach37 3 年 前
stimfit e5dbc29dfd gin commit from hambach37 3 年 前
tdt e5dbc29dfd gin commit from hambach37 3 年 前
tridesclous e5dbc29dfd gin commit from hambach37 3 年 前
winedr e5dbc29dfd gin commit from hambach37 3 年 前
winwcp e5dbc29dfd gin commit from hambach37 3 年 前
.gitattributes de5d0afded gin commit from hambach37 3 年 前
.gitignore de5d0afded gin commit from hambach37 3 年 前
LICENSE de5d0afded gin commit from hambach37 3 年 前
README.md 5ff8d2acd2 gin commit from nit-ope-de04 3 年 前
config.yml de5d0afded gin commit from hambach37 3 年 前

README.md

Electrophysiology Testing Data

Collection of testing data in various electrophysiology file formats. The datasets in this repository are used within the Neo project.

Contributing

If you have small data files in a format used in electrophysiology and you want to make these files publicly available for the purpose of software building on that format, then this is the right place to contribute!

Requirements

To contribute a dataset the following criteria need to be fulfilled

  • You need to have the rights to publish the data files
  • The data files need to be small in size (ideally in the range of kilobytes, no more than 10MB)

How to add files

To add files to the repository please follow the steps below.

1) On the gin platform

  • Create a gin account
  • Open an issue stating the format of files you would like to add. Please specify in this issue, which type of system is generating these files and in which software your files could be used as testing files. After reviewing the proposed format you will be added as a collaborator to the project.

2) On your local computer

  • Install the gin client on your machine (gin-cli setup instructions)
  • Log in with your gin-cli (gin login)
  • Create a local copy of the repository on your machine (gin get NeuralEnsemble/ephy_testing_data)
  • Create a new git branch to work on via gin git checkout -b <my_branch_name>
  • Create a new subfolder with the corresponding system brand name or identify the folder to which to add your files.
  • Copy your files in the new folder. Feel free to add an attribution to it, e.g. see this readme.
  • Commit your files via gin commit <folder_name>
  • Lock the files via gin lock *
  • Upload your changes to gin via gin upload

Note: You can also commit files using any other git-annex capable tool. However, make sure that the .gitattributes specifications are respected and files are committed in a locked state. Only the README and LICENCE file should be committed to git, all other files should be tracked by git-annex.

3) On the gin platform

  • The new branch <my_branch_name> should be available at the webpage. Verify that the changes are correctly registered in this branch.
  • Open a pull request (PR) with your changes to the master branch of the NeuralEnsemble/ephy_testing_data repository. In your PR description please specify again what format you want to add, which type of system is generating these files and which software could make use of these.
  • You will potentially receive comments from the repository maintainers asking you to change some details in your PR. Please do not merge your own pull request!
  • After resolving the comments your files will be merged into the main repository. Congratulation! Your files are now part of the growing collection of electrophysiology testing files and can now be used by any project to check for file format compatibility.

Note: Don't forget to switch back to the master branch after completion of your PR: gin git checkout master