We use cookies to ensure you get the best experience on our website
Kezdőlap Felfedezés Súgó News
Regisztráció Bejelentkezés
NeuralEnsemble
/
ephy_testing_data
9
6
Másolás 15
Fájlok Problémák 10 Beolvasztási kérések 4 Wiki

Collection of testing data in various electrophysiology file formats.

Fa: 56ff9cd024
Branch-ok Tag-ek
ephy_testing...
sprenger 56ff9cd024 gin commit from nit-ope-de04 2 éve
alphaomega 428590b417 Better describe test dataset 2 éve
asciisignal e5dbc29dfd gin commit from hambach37 3 éve
asciispiketrain e5dbc29dfd gin commit from hambach37 3 éve
axograph e5dbc29dfd gin commit from hambach37 3 éve
axon e5dbc29dfd gin commit from hambach37 3 éve
axona fcb3f31bfd gin commit from nit-ope-de04 2 éve
bci2000 e5dbc29dfd gin commit from hambach37 3 éve
biocam 651d5c8cc0 gin commit from bs-mbpr415.d.ethz.ch 2 éve
blackrock e5dbc29dfd gin commit from hambach37 3 éve
brainvision e5dbc29dfd gin commit from hambach37 3 éve
brainwaredam e5dbc29dfd gin commit from hambach37 3 éve
brainwaref32 e5dbc29dfd gin commit from hambach37 3 éve
brainwaresrc e5dbc29dfd gin commit from hambach37 3 éve
cellexplorer 56ff9cd024 gin commit from nit-ope-de04 2 éve
edf 8f58275392 gin commit from nit-ope-de04 2 éve
elan e5dbc29dfd gin commit from hambach37 3 éve
elphy e5dbc29dfd gin commit from hambach37 3 éve
igor e5dbc29dfd gin commit from hambach37 3 éve
intan e5dbc29dfd gin commit from hambach37 3 éve
klustakwik e5dbc29dfd gin commit from hambach37 3 éve
kwik e5dbc29dfd gin commit from hambach37 3 éve
maxwell 167fd83cd9 gin commit from nit-ope-de04 3 éve
mearec e5dbc29dfd gin commit from hambach37 3 éve
micromed e5dbc29dfd gin commit from hambach37 3 éve
neohdf5 e5dbc29dfd gin commit from hambach37 3 éve
nest e5dbc29dfd gin commit from hambach37 3 éve
neuralynx bd4dc856d6 gin commit from nit-ope-de04 2 éve
neuroexplorer e5dbc29dfd gin commit from hambach37 3 éve
neuroscope 9e11e4dd65 gin commit from nit-ope-de04 2 éve
neuroshare e5dbc29dfd gin commit from hambach37 3 éve
nix e5dbc29dfd gin commit from hambach37 3 éve
nwb 3bbead7d3e locking nwb file 2 éve
openephys e5dbc29dfd gin commit from hambach37 3 éve
openephysbinary d65f468203 gin commit from nit-ope-de04 2 éve
phy e5dbc29dfd gin commit from hambach37 3 éve
plexon e5dbc29dfd gin commit from hambach37 3 éve
rawbinarysignal e5dbc29dfd gin commit from hambach37 3 éve
rawmcs e5dbc29dfd gin commit from hambach37 3 éve
spike2 9a6519c232 gin commit from samuel-pc 3 éve
spikegadgets da4edad8f0 gin commit from nit-ope-de04 3 éve
spikeglx 2a98caf770 gin commit from samuel-pc 2 éve
spykingcircus e5dbc29dfd gin commit from hambach37 3 éve
stimfit e5dbc29dfd gin commit from hambach37 3 éve
tdt e5dbc29dfd gin commit from hambach37 3 éve
tridesclous e5dbc29dfd gin commit from hambach37 3 éve
winedr e5dbc29dfd gin commit from hambach37 3 éve
winwcp e5dbc29dfd gin commit from hambach37 3 éve
.gitattributes de5d0afded gin commit from hambach37 3 éve
.gitignore de5d0afded gin commit from hambach37 3 éve
LICENSE de5d0afded gin commit from hambach37 3 éve
README.md 5ff8d2acd2 gin commit from nit-ope-de04 3 éve
config.yml de5d0afded gin commit from hambach37 3 éve

README.md

Electrophysiology Testing Data

Collection of testing data in various electrophysiology file formats. The datasets in this repository are used within the Neo project.

Contributing

If you have small data files in a format used in electrophysiology and you want to make these files publicly available for the purpose of software building on that format, then this is the right place to contribute!

Requirements

To contribute a dataset the following criteria need to be fulfilled

  • You need to have the rights to publish the data files
  • The data files need to be small in size (ideally in the range of kilobytes, no more than 10MB)

How to add files

To add files to the repository please follow the steps below.

1) On the gin platform

  • Create a gin account
  • Open an issue stating the format of files you would like to add. Please specify in this issue, which type of system is generating these files and in which software your files could be used as testing files. After reviewing the proposed format you will be added as a collaborator to the project.

2) On your local computer

  • Install the gin client on your machine (gin-cli setup instructions)
  • Log in with your gin-cli (gin login)
  • Create a local copy of the repository on your machine (gin get NeuralEnsemble/ephy_testing_data)
  • Create a new git branch to work on via gin git checkout -b <my_branch_name>
  • Create a new subfolder with the corresponding system brand name or identify the folder to which to add your files.
  • Copy your files in the new folder. Feel free to add an attribution to it, e.g. see this readme.
  • Commit your files via gin commit <folder_name>
  • Lock the files via gin lock *
  • Upload your changes to gin via gin upload

Note: You can also commit files using any other git-annex capable tool. However, make sure that the .gitattributes specifications are respected and files are committed in a locked state. Only the README and LICENCE file should be committed to git, all other files should be tracked by git-annex.

3) On the gin platform

  • The new branch <my_branch_name> should be available at the webpage. Verify that the changes are correctly registered in this branch.
  • Open a pull request (PR) with your changes to the master branch of the NeuralEnsemble/ephy_testing_data repository. In your PR description please specify again what format you want to add, which type of system is generating these files and which software could make use of these.
  • You will potentially receive comments from the repository maintainers asking you to change some details in your PR. Please do not merge your own pull request!
  • After resolving the comments your files will be merged into the main repository. Congratulation! Your files are now part of the growing collection of electrophysiology testing files and can now be used by any project to check for file format compatibility.

Note: Don't forget to switch back to the master branch after completion of your PR: gin git checkout master