[DATALAD] Recorded changes

code/models/blocks/confusion_inverse_model_binomial_hurdle.stan

@@ -6,12 +6,9 @@ real inverse_model_lpdf(array [] matrix actual_confusion,
     array [,] int vocs,
     array [] real age,
     matrix truth_vocs,
-    //array [] vector actual_fp_rate,
     matrix mus,
     matrix etas,
-    matrix p//,
-    //vector mus_fp,
-    //vector alphas_fp
+    matrix p
     ) {
         real ll = 0;
 
@@ -24,11 +21,9 @@ real inverse_model_lpdf(array [] matrix actual_confusion,
 
             for (i in 1:n_classes) {
                 ll += beta_proportion_lpdf(actual_confusion[k-start+1,i] | mus[i,:], etas[i,:]);
-                //ll += gamma_lpdf(actual_fp_rate[k] | alphas_fp, alphas_fp./mus_fp);
                 
                 expect[i] = dot_product(truth_vocs[k,:], (2-p[:,i]).*actual_confusion[k-start+1,:,i]);
                 sd[i] = dot_product(truth_vocs[k,:], (2-p[:,i]).*(actual_confusion[k-start+1,:,i].*(1-actual_confusion[k-start+1,:,i])));
-                //expect[i] += actual_fp_rate[k,i] * duration;
             }
             
             ll += normal_lpdf(vocs[k,:] | expect, sqrt(sd));