scores extraction fix

code/scores/extract_clips.py

@@ -39,7 +39,7 @@ def extract_clips(parameters):
             clip['recording_path'],
             sr = 16000,
             offset = (onset-2000)/1000,
-            duration = (offset-onset+2000)/1000
+            duration = (offset-onset+4000)/1000
         )
 
         output = f'output/clips/{bn}_{onset}_{offset}.wav'
@@ -51,4 +51,4 @@ def extract_clips(parameters):
 annotators = pd.read_csv('input/annotators.csv')
 annotators['path'] = annotators['corpus'].apply(lambda c: opj('input', c))
 clips = pd.concat([extract_clips(annotator) for annotator in annotators.to_dict(orient = 'records')])
-clips.to_csv('output/clips/clips.csv', index = False)
+clips.to_csv('output/clips/clips.csv', index = False)

code/scores/stats.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python3
+# find ../../data/solomon-ana/output/clips -maxdepth 1 -type f -exec sbatch -c 2 --mem 1G -o vtc ./apply.sh {} --device=cpu \;
 
 from ChildProject.projects import ChildProject
 from ChildProject.annotations import AnnotationManager
@@ -35,28 +36,20 @@ def process_clip(am, annotator, clip):
     speakers = ['CHI', 'OCH', 'FEM', 'MAL']
     vtc_speakers = ['KCHI', 'CHI', 'FEM', 'MAL']
 
-    print('reading scores...')
-
     data = None
     for i, speaker in enumerate(vtc_speakers):
         signal, sr = librosa.load(
             clip_path + f'/{speaker}.wav',
-            sr = 16000,
-            offset = 2,
-            duration = (range_offset-range_onset)/1000
+            sr = None
         )
-        print(pd.DataFrame(signal).describe())
+        time_scale = len(signal)/(range_offset-range_onset+4000)
+        signal = signal[int(2000*time_scale):-int(2000*time_scale)]
+
         if data is not None:
             data = np.vstack((data, signal))
         else:
             data = signal
 
-    print('done.')
-
-    print(data.shape)
-    time_scale = data.shape[1]/(range_offset-range_onset)
-    print(time_scale)
-
     segments = am.get_segments(ann)
     if not len(segments):
         return None
@@ -67,15 +60,11 @@ def process_clip(am, annotator, clip):
         for speaker in speakers
     }
     
-    print(vtc)
-
     truth = {
         speaker: segments_to_annotation(segments[(segments['set'] == annotator) & (segments['speaker_type'] == speaker)], 'speaker_type').get_timeline()
         for speaker in speakers
     }
     
-    print(truth)
-
     stats = {}
     for i, speaker_A in enumerate(speakers):
         vtc[f'{speaker_A}_vocs_explained'] = vtc[speaker_A].crop(truth[speaker_A], mode = 'loose')
@@ -86,17 +75,12 @@ def process_clip(am, annotator, clip):
             vtc[f'{speaker_A}_vocs_fp_{speaker_B}'] = vtc[f'{speaker_A}_vocs_fp'].crop(truth[speaker_B], mode = 'loose')
 
         s = []
-        for explained in vtc[speaker_A]:
+        for explained in vtc[f'{speaker_A}_vocs_explained']:
             onset, offset = explained
             onset -= range_onset
             offset -= range_onset
-
-            print(speaker_A, onset, offset)
-            print(data[i, int(onset*time_scale):int(offset*time_scale)])
-            print(np.mean(data[i, int(onset*time_scale):int(offset*time_scale)]))
             
             s.append(np.mean(data[i, int(onset*time_scale):int(offset*time_scale)]))
-
         stats[f'{speaker_A}_vocs_explained'] = s
 
         for j, speaker_B in enumerate(speakers):
@@ -109,14 +93,11 @@ def process_clip(am, annotator, clip):
                 offset -= range_onset
 
                 sA.append(np.mean(data[i, int(onset*time_scale):int(offset*time_scale)]))
-                sA.append(np.mean(data[j, int(onset*time_scale):int(offset*time_scale)]))
-
+                sB.append(np.mean(data[j, int(onset*time_scale):int(offset*time_scale)]))
 
             stats[f'{speaker_A}_vocs_fp_{speaker_B}_false'] = sA
             stats[f'{speaker_A}_vocs_fp_{speaker_B}_true'] = sB
 
-    print(stats)
-
     return stats
     
 
@@ -147,7 +128,26 @@ def generate_stats(parameters):
     return stats
     
 if __name__ == '__main__':
-    annotators = pd.read_csv('input/annotators.csv')
+    annotators = pd.read_csv('input/annotators.csv')[0:1]
     annotators['path'] = annotators['corpus'].apply(lambda c: opj('input', c))
     stats = [generate_stats(annotator) for annotator in annotators.to_dict(orient = 'records')]
-
+    stats = sum(stats, [])
+
+    combined = {}
+
+    for k in stats[0].keys():
+        combined[k] = []
+        for s in stats:
+            if s is None:
+                continue
+            combined[k] += s[k]
+
+    for k in combined.keys():
+        if len(combined[k]) == 0:
+            continue
+        print(k,
+            np.mean(combined[k]),
+            np.quantile(combined[k], 0.1),
+            np.quantile(combined[k], 0.9),
+            len(combined[k])
+        )

output/scores/e20190821_134438_013100_22350000_22410000/CHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/4p/m9/MD5E-s36785--ca3371428db85cfaacb2596502f3a35d.wav/MD5E-s36785--ca3371428db85cfaacb2596502f3a35d.wav
+../../../.git/annex/objects/GM/z4/MD5E-s37970--26084f6c10e83c772bd8b08681132ae7.wav/MD5E-s37970--26084f6c10e83c772bd8b08681132ae7.wav

output/scores/e20190821_134438_013100_22350000_22410000/FEM.wav

@@ -1 +1 @@
-../../../.git/annex/objects/5g/0m/MD5E-s36785--44f8fb77e72ebb30dffceef6d1410157.wav/MD5E-s36785--44f8fb77e72ebb30dffceef6d1410157.wav
+../../../.git/annex/objects/92/2f/MD5E-s37970--69c1ad49fba00ef455ae13be634a1f58.wav/MD5E-s37970--69c1ad49fba00ef455ae13be634a1f58.wav

output/scores/e20190821_134438_013100_22350000_22410000/KCHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/kx/91/MD5E-s36785--b26081b1dafe302bcf890f3f7c1d6577.wav/MD5E-s36785--b26081b1dafe302bcf890f3f7c1d6577.wav
+../../../.git/annex/objects/X0/xQ/MD5E-s37970--2f83ecea7b63b095405d27540842e51b.wav/MD5E-s37970--2f83ecea7b63b095405d27540842e51b.wav

output/scores/e20190821_134438_013100_22350000_22410000/MAL.wav

@@ -1 +1 @@
-../../../.git/annex/objects/jp/K5/MD5E-s36785--ffdd2d55c55ae1749fd60535c1e95b77.wav/MD5E-s36785--ffdd2d55c55ae1749fd60535c1e95b77.wav
+../../../.git/annex/objects/6z/95/MD5E-s37970--15964b53cfd90faaaa2302ae1b6671fe.wav/MD5E-s37970--15964b53cfd90faaaa2302ae1b6671fe.wav

output/scores/e20190821_134438_013100_22350000_22410000/SPEECH.wav

@@ -1 +1 @@
-../../../.git/annex/objects/z7/Qm/MD5E-s36785--3845104d4e819326d0b33a430ae2cefc.wav/MD5E-s36785--3845104d4e819326d0b33a430ae2cefc.wav
+../../../.git/annex/objects/7g/WF/MD5E-s37970--33db7c8e75b3c9b45b1cae06346296b1.wav/MD5E-s37970--33db7c8e75b3c9b45b1cae06346296b1.wav

output/scores/e20190821_134438_013100_2250000_2310000/CHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/xg/zv/MD5E-s36785--c03455d729f5e2d17d89f5fb5ba5e628.wav/MD5E-s36785--c03455d729f5e2d17d89f5fb5ba5e628.wav
+../../../.git/annex/objects/Pq/fZ/MD5E-s37970--7f88d1a02222e5201ccc9ffd1643aad7.wav/MD5E-s37970--7f88d1a02222e5201ccc9ffd1643aad7.wav

output/scores/e20190821_134438_013100_2250000_2310000/FEM.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/X5/M2/MD5E-s870--9244dd2b40d38b509ab3b1b9244b2267.rttm/MD5E-s870--9244dd2b40d38b509ab3b1b9244b2267.rttm
+../../../.git/annex/objects/77/4v/MD5E-s870--052bfe20a9c20be826092c20ec150043.rttm/MD5E-s870--052bfe20a9c20be826092c20ec150043.rttm

output/scores/e20190821_134438_013100_2250000_2310000/FEM.wav

@@ -1 +1 @@
-../../../.git/annex/objects/QK/Gm/MD5E-s36785--294185d06b5810f944b8d787cced394f.wav/MD5E-s36785--294185d06b5810f944b8d787cced394f.wav
+../../../.git/annex/objects/3X/2V/MD5E-s37970--a2742a1f148722c902c5aef3e1ebbe58.wav/MD5E-s37970--a2742a1f148722c902c5aef3e1ebbe58.wav

output/scores/e20190821_134438_013100_2250000_2310000/KCHI.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/72/Kq/MD5E-s966--029c874c6063def04760cae4e266627e.rttm/MD5E-s966--029c874c6063def04760cae4e266627e.rttm
+../../../.git/annex/objects/Fv/FX/MD5E-s966--3795264de58f2c07d312c360a6b30c1f.rttm/MD5E-s966--3795264de58f2c07d312c360a6b30c1f.rttm

output/scores/e20190821_134438_013100_2250000_2310000/KCHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/qk/m5/MD5E-s36785--2aa35a29fa1ebef50148968f8e1344d5.wav/MD5E-s36785--2aa35a29fa1ebef50148968f8e1344d5.wav
+../../../.git/annex/objects/PZ/zZ/MD5E-s37970--ea4bc3a70a5e7378d038ee177eb2038d.wav/MD5E-s37970--ea4bc3a70a5e7378d038ee177eb2038d.wav

output/scores/e20190821_134438_013100_2250000_2310000/MAL.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/pm/9k/MD5E-s87--a27ad52aa50c48fa31ff6cd2161e0478.rttm/MD5E-s87--a27ad52aa50c48fa31ff6cd2161e0478.rttm
+../../../.git/annex/objects/K2/mk/MD5E-s174--4e6e2ecab8a3299be763af9e21ef4f0b.rttm/MD5E-s174--4e6e2ecab8a3299be763af9e21ef4f0b.rttm

output/scores/e20190821_134438_013100_2250000_2310000/MAL.wav

@@ -1 +1 @@
-../../../.git/annex/objects/kz/57/MD5E-s36785--c0c2b9e1aa7c396e32a64afc671375c3.wav/MD5E-s36785--c0c2b9e1aa7c396e32a64afc671375c3.wav
+../../../.git/annex/objects/7W/j0/MD5E-s37970--c390ea2f77c66e4627d79c289dea42b0.wav/MD5E-s37970--c390ea2f77c66e4627d79c289dea42b0.wav

output/scores/e20190821_134438_013100_2250000_2310000/SPEECH.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/Wq/Vw/MD5E-s988--b63d6c0ca8b6442c413e38195aeb2b3c.rttm/MD5E-s988--b63d6c0ca8b6442c413e38195aeb2b3c.rttm
+../../../.git/annex/objects/q5/wX/MD5E-s988--7e26099119e205301a909458c60f1542.rttm/MD5E-s988--7e26099119e205301a909458c60f1542.rttm

output/scores/e20190821_134438_013100_2250000_2310000/SPEECH.wav

@@ -1 +1 @@
-../../../.git/annex/objects/qf/Q6/MD5E-s36785--93c7e09f54c70b232e707810510c7877.wav/MD5E-s36785--93c7e09f54c70b232e707810510c7877.wav
+../../../.git/annex/objects/W9/4z/MD5E-s37970--f67b8fc85151c6a508edd2ce519cc96d.wav/MD5E-s37970--f67b8fc85151c6a508edd2ce519cc96d.wav

output/scores/e20190821_134438_013100_2250000_2310000/all.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/Fg/zp/MD5E-s3603--665382351de8226d063a9f8d90da6343.rttm/MD5E-s3603--665382351de8226d063a9f8d90da6343.rttm
+../../../.git/annex/objects/70/q7/MD5E-s3690--861631217d317bdacda070b0f5685a3c.rttm/MD5E-s3690--861631217d317bdacda070b0f5685a3c.rttm

output/scores/e20190821_134438_013100_25050000_25110000/CHI.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/F2/6v/MD5E-s178--755b565161108884e75cb4dd60cb5551.rttm/MD5E-s178--755b565161108884e75cb4dd60cb5551.rttm
+../../../.git/annex/objects/Ww/63/MD5E-s445--6836377ad5eb87c44419853a95664200.rttm/MD5E-s445--6836377ad5eb87c44419853a95664200.rttm

output/scores/e20190821_134438_013100_25050000_25110000/CHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/Pj/jF/MD5E-s36785--d2ba5b20eaf3b9c9a003c3103b43f56c.wav/MD5E-s36785--d2ba5b20eaf3b9c9a003c3103b43f56c.wav
+../../../.git/annex/objects/8X/Pq/MD5E-s37970--eb571a2872b0f31aa0b677c7c07cc26a.wav/MD5E-s37970--eb571a2872b0f31aa0b677c7c07cc26a.wav

output/scores/e20190821_134438_013100_25050000_25110000/FEM.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/KV/kP/MD5E-s1242--4a4e9f54108161bb1695686011cd6dbf.rttm/MD5E-s1242--4a4e9f54108161bb1695686011cd6dbf.rttm
+../../../.git/annex/objects/0p/GK/MD5E-s1242--e9bca1bf7b42f726e66f024a827a4f0d.rttm/MD5E-s1242--e9bca1bf7b42f726e66f024a827a4f0d.rttm

output/scores/e20190821_134438_013100_25050000_25110000/FEM.wav

@@ -1 +1 @@
-../../../.git/annex/objects/5k/f5/MD5E-s36785--fa989f73fb147217d0765bbae5d9e7d9.wav/MD5E-s36785--fa989f73fb147217d0765bbae5d9e7d9.wav
+../../../.git/annex/objects/xz/fW/MD5E-s37970--92992057dc20dc9dc2b44b575856d760.wav/MD5E-s37970--92992057dc20dc9dc2b44b575856d760.wav

output/scores/e20190821_134438_013100_25050000_25110000/KCHI.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/qv/xk/MD5E-s360--61873181fb1413206afce558e28c90f5.rttm/MD5E-s360--61873181fb1413206afce558e28c90f5.rttm
+../../../.git/annex/objects/8v/46/MD5E-s450--a656488f87dafb5db471edfdd8941469.rttm/MD5E-s450--a656488f87dafb5db471edfdd8941469.rttm

output/scores/e20190821_134438_013100_25050000_25110000/KCHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/6Z/z8/MD5E-s36785--19dec7e9a62256bdfe3c7c7202602928.wav/MD5E-s36785--19dec7e9a62256bdfe3c7c7202602928.wav
+../../../.git/annex/objects/Km/77/MD5E-s37970--9abf3d5ea89e09d8f0bfe780944ad7fd.wav/MD5E-s37970--9abf3d5ea89e09d8f0bfe780944ad7fd.wav

output/scores/e20190821_134438_013100_25050000_25110000/MAL.wav

@@ -1 +1 @@
-../../../.git/annex/objects/m6/Qj/MD5E-s36785--ac2dff6911becd8ec432f044ee40ad4a.wav/MD5E-s36785--ac2dff6911becd8ec432f044ee40ad4a.wav
+../../../.git/annex/objects/Vg/3M/MD5E-s37970--042501ba8a93d4462ec403197351b2fa.wav/MD5E-s37970--042501ba8a93d4462ec403197351b2fa.wav

output/scores/e20190821_134438_013100_25050000_25110000/SPEECH.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/w7/6V/MD5E-s554--9a6eed056cdb9c2590947c5940dbc4a3.rttm/MD5E-s554--9a6eed056cdb9c2590947c5940dbc4a3.rttm
+../../../.git/annex/objects/28/Kx/MD5E-s554--2d1a3fac514325543db980fc63646261.rttm/MD5E-s554--2d1a3fac514325543db980fc63646261.rttm

output/scores/e20190821_134438_013100_25050000_25110000/SPEECH.wav

@@ -1 +1 @@
-../../../.git/annex/objects/47/MV/MD5E-s36785--fdd5d5ef8ba80037943814b3bb18724b.wav/MD5E-s36785--fdd5d5ef8ba80037943814b3bb18724b.wav
+../../../.git/annex/objects/xX/3F/MD5E-s37970--b6da8540a9adea293aeec1e10c9666e0.wav/MD5E-s37970--b6da8540a9adea293aeec1e10c9666e0.wav

output/scores/e20190821_134438_013100_25050000_25110000/all.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/27/qg/MD5E-s3399--b7eb0825bf9b4f29a3a724492061c5c0.rttm/MD5E-s3399--b7eb0825bf9b4f29a3a724492061c5c0.rttm
+../../../.git/annex/objects/FF/w0/MD5E-s3756--b8c3dfcd50f9c0d1c673961941c34b0c.rttm/MD5E-s3756--b8c3dfcd50f9c0d1c673961941c34b0c.rttm

output/scores/e20190821_134438_013100_32550000_32610000/CHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/Qz/MW/MD5E-s36785--44ab084c615bb04516c521ea260ed9eb.wav/MD5E-s36785--44ab084c615bb04516c521ea260ed9eb.wav
+../../../.git/annex/objects/8x/Fm/MD5E-s37970--59011253dbb95eaf603d49a01c50e1ee.wav/MD5E-s37970--59011253dbb95eaf603d49a01c50e1ee.wav

output/scores/e20190821_134438_013100_32550000_32610000/FEM.wav

@@ -1 +1 @@
-../../../.git/annex/objects/2j/q6/MD5E-s36785--70f2b7ca8c27038b6465312d4b126f6e.wav/MD5E-s36785--70f2b7ca8c27038b6465312d4b126f6e.wav
+../../../.git/annex/objects/F0/Xk/MD5E-s37970--294e44011e8510d34ed24c8328bb362a.wav/MD5E-s37970--294e44011e8510d34ed24c8328bb362a.wav

output/scores/e20190821_134438_013100_32550000_32610000/KCHI.wav

@@ -1 +1 @@
-../../../.git/annex/objects/8M/Vm/MD5E-s36785--a29bc99b87a7c5132952c3d098e2af51.wav/MD5E-s36785--a29bc99b87a7c5132952c3d098e2af51.wav
+../../../.git/annex/objects/4v/8Z/MD5E-s37970--6b4d3354786f7b709b836616499a92f1.wav/MD5E-s37970--6b4d3354786f7b709b836616499a92f1.wav

output/scores/e20190821_134438_013100_32550000_32610000/MAL.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/qM/5G/MD5E-s533--cd569d7930a45653b025eda2c0e682f8.rttm/MD5E-s533--cd569d7930a45653b025eda2c0e682f8.rttm
+../../../.git/annex/objects/73/p1/MD5E-s622--99271e0dd16f30861bd29b918dba4d9e.rttm/MD5E-s622--99271e0dd16f30861bd29b918dba4d9e.rttm

output/scores/e20190821_134438_013100_32550000_32610000/MAL.wav

@@ -1 +1 @@
-../../../.git/annex/objects/qW/5v/MD5E-s36785--04601eb2bc49987c30c3bb271958e226.wav/MD5E-s36785--04601eb2bc49987c30c3bb271958e226.wav
+../../../.git/annex/objects/5W/wX/MD5E-s37970--7b7e965a01da8cb21358603fa7d33c1e.wav/MD5E-s37970--7b7e965a01da8cb21358603fa7d33c1e.wav

output/scores/e20190821_134438_013100_32550000_32610000/SPEECH.rttm

@@ -1 +1 @@
-../../../.git/annex/objects/03/0v/MD5E-s644--1ae1eaa6b6a7660dfbb590a02056c59b.rttm/MD5E-s644--1ae1eaa6b6a7660dfbb590a02056c59b.rttm
+../../../.git/annex/objects/0Q/M3/MD5E-s736--4ddd4f0a7fa296b102b1ba9caf0d644f.rttm/MD5E-s736--4ddd4f0a7fa296b102b1ba9caf0d644f.rttm

output/scores/e20190821_134438_013100_32550000_32610000/SPEECH.wav

@@ -1 +1 @@
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+../../../.git/annex/objects/Pg/kg/MD5E-s37970--979f0eda2ec1249697ea53bdf15db678.wav/MD5E-s37970--979f0eda2ec1249697ea53bdf15db678.wav

output/scores/e20190821_134438_013100_32550000_32610000/all.rttm

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