eigenangles/polychrony_network/README.md

Comparing the correlation structure of a network model across simulators

This folder contains the workflow to create correlation matrices from previously simulated spiking activity of the polychonization model (Izhikevich 2006) generated with two different Simulators (C, SpiNNaker). <<<<<<< HEAD

The comparison use-case and the corresponding data is taken from Trensch et al. 2018 and Gutzen et al. 2018, Trensch et al. 2018 with the corresponding public data repository INM-6/network_validation.

The comparison use-case and the corresponding data is taken from (Trensch et al. 2018)[https://doi.org/10.3389/fninf.2018.00081] and (Gutzen et al. 2018)[https://doi.org/10.3389/fninf.2018.00090], (Trensch et al. 2018)[https://doi.org/10.3389/fninf.2018.00081] with the corresponding public data repository (https://gin.g-node.org/INM-6/network_validation)[https://gin.g-node.org/INM-6/network_validation].

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To perform the comparisons with the eigenangle and the Kolmogorov-Smirnov test, the main functionalities of the workflow are:

• snakemake scan performs the 5 comparisons across simulators.
• snakemake results/simulator_comparison.csv aggregates the results in a dataframe.