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add neo and elephant to intro slides

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b1d1bd7960

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day_0/intro_presentation_nix.pdf


+ 76 - 1
day_0/intro_presentation_nix.tex

@@ -226,6 +226,79 @@
     $\Rightarrow$ Storing to NIX can be embedded into the recording software \url{http://relacs.sourceforge.net}.
 \end{frame}
 
+\begin{frame}{Reproducibility crisis also in the Neurosciences}
+    \begin{center}
+        \includegraphics[width=0.75\columnwidth]{resources/standards}\rotatebox{90}{\url{https://xkcd.com/927}}\\
+        \vspace{1ex}
+        \textit{...and the other 40+ ephys data standards?}
+    \end{center}
+\end{frame}
+
+
+\begin{frame}{Neo}
+    \begin{columns}
+        \begin{column}{6.5cm}
+            \includegraphics[height=.8\textheight]{resources/neo_IODiagram.png}
+        \end{column}
+        \begin{column}{5.5cm}
+        \includegraphics[width=4cm]{resources/neo_logo_transparent.png}
+            \begin{itemize}
+                \item interfaces to 40+ ephys properietary \& open formats in various versions
+                \vspace{1ex}
+                \item provides a standardized ephys data \textbf{representation}, it is not a file format.
+                \item reads all formats, but provides writing capability only for selected open formats.
+            \end{itemize}
+        \end{column}
+    \end{columns}
+\end{frame}
+
+
+\begin{frame}{Neo}
+    A basis for
+    \begin{itemize}
+        \item format conversion
+        \item custom data analysis
+        \item diverse tools dealing with ephys data
+    \end{itemize}
+    \vspace{1ex}
+    \includegraphics[width=\textwidth]{resources/neo_as_interface.png}
+\end{frame}
+
+
+\begin{frame}{Elephant}
+    \begin{columns}
+        \begin{column}{5cm}
+            \includegraphics[width=\textwidth]{resources/elephant_structure.png}
+        \end{column}
+        \begin{column}{7cm}
+            Electrophysiology Analysis Toolkit
+            \begin{itemize}
+                \item electrophysiology data preprocessing
+                \item spiketrain analysis
+                \item local field potential analysis
+            \end{itemize}
+        \end{column}
+    \end{columns}
+\end{frame}
+
+
+\begin{frame}{Viziphant}
+    \begin{columns}
+        \begin{column}{6cm}
+            \includegraphics[width=\textwidth]{resources/viziphant_logo_sidebar.png}
+        \end{column}
+        \begin{column}{6cm}
+            Quick and easy visualizations
+            \begin{itemize}
+                \item of Neo based electrophysiology data
+                \item of Elephant analysis results
+            \end{itemize}
+        \end{column}
+    \end{columns}
+\end{frame}
+
+
+
 
 \begin{frame}{NIX-NEO Workshop}
     In this workshop we will ...
@@ -233,6 +306,8 @@
         \item introduce the ideas and concepts of the NIX data model.
         \item show how various data types can be represented with it.
         \item show how to use and find data in NIX files.
+        \item become familiar with the Neo representation of electrophysiology data.
+        \item learn how to used Elephant and Viziphant for data analysis and visualizations.
         \item use a lot of hands-on exercises.
     \end{itemize}
 \end{frame}
@@ -332,4 +407,4 @@
     }
 \end{frame}
 
-\end{document}
+\end{document}

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day_0/resources/elephant_structure.png


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day_0/resources/neo_IODiagram.png


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day_0/resources/neo_as_interface.png


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+ 858 - 0
day_0/resources/neo_as_interface.svg


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day_0/resources/neo_logo_transparent.png


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day_0/resources/viziphant_logo_sidebar.png