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WHS_SD_rat_atlas_v4.label

WHS_SD_rat_atlas_v4.label 16 KB
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  1. ################################################
    2. 

  2. # ITK-SnAP Label Description File
    3. 

  3. # File format: 
    4. 

  4. # IDX   -R-  -G-  -B-  -A--  VIS MSH  LABEL
    5. 

  5. # Fields: 
    6. 

  6. #    IDX:   Zero-based index 
    7. 

  7. #    -R-:   Red color component (0..255)
    8. 

  8. #    -G-:   Green color component (0..255)
    9. 

  9. #    -B-:   Blue color component (0..255)
    10. 

  10. #    -A-:   Label transparency (0.00 .. 1.00)
    11. 

  11. #    VIS:   Label visibility (0 or 1)
    12. 

  12. #    IDX:   Label mesh visibility (0 or 1)
    13. 

  13. #  LABEL:   Label description 
    14. 

  14. ################################################
    15. 

  15.     0     0    0    0        0  0  0    "Clear Label"
    16. 

  16.     1   255   52   39        1  1  0    "corticofugal tract and corona radiata"
    17. 

  17.     3     0    0  255        1  1  0    "Subthalamic nucleus"
    18. 

  18.     4   255  255    1        1  1  0    "Molecular cell layer of the cerebellum"
    19. 

  19.     5     0  255  255        1  1  0    "Cerebellum, unspecified"
    20. 

  20.     6   255    0  255        1  1  0    "alveus of the hippocampus"
    21. 

  21.     7    52  255   13        1  1  0    "inferior cerebellar peduncle"
    22. 

  22.    10    29  104  235        1  1  0    "Cingulate area 2"
    23. 

  23.    32    26  231  255        1  1  0    "Entopeduncular nucleus"
    24. 

  24.    33     2   44  255        1  1  0    "Ventricular system, unspecified"
    25. 

  25.    34   212  255    0        1  1  0    "medial lemniscus, unspecified"
    26. 

  26.    35   255   25  240        1  1  0    "facial nerve, unspecified"
    27. 

  27.    36   124  252    0        1  1  0    "anterior commissure, anterior limb"
    28. 

  28.    37   255  186    0        1  1  0    "anterior commissure, posterior limb"
    29. 

  29.    38   174    0  232        1  1  0    "ventral hippocampal commissure"
    30. 

  30.    40   255    8    0        1  1  0    "Septal region"
    31. 

  31.    41    48  218    0        1  1  0    "optic nerve"
    32. 

  32.    42    38  126  255        1  1  0    "optic tract and optic chiasm"
    33. 

  33.    43   218  170   62        1  1  0    "Pineal gland"
    34. 

  34.    45   134  255   90        1  1  0    "Spinal cord"
    35. 

  35.    46    33  230  255        1  1  0    "commissure of the superior colliculus"
    36. 

  36.    47   153   83  255        1  1  0    "Brainstem, unspecified"
    37. 

  37.    48   226  120  161        1  1  0    "Hypothalamic region, unspecified"
    38. 

  38.    50    86    0  221        1  1  0    "Superficial gray layer of the superior colliculus"
    39. 

  39.    51     7  255   89        1  1  0    "Periaqueductal gray"
    40. 

  40.    52    21  192  255        1  1  0    "fornix"
    41. 

  41.    53   238  186    0        1  1  0    "mammillotegmental tract"
    42. 

  42.    54   173  255   47        1  1  0    "commissural stria terminalis"
    43. 

  43.    55   225  151   15        1  1  0    "Deeper layers of the superior colliculus"
    44. 

  44.    56   235   87  255        1  1  0    "Periventricular gray"
    45. 

  45.    57   250  244  247        1  1  0    "genu of the facial nerve"
    46. 

  46.    58     0  215   11        1  1  0    "Pontine nuclei"
    47. 

  47.    59     0  255   29        1  1  0    "fimbria of the hippocampus"
    48. 

  48.    60   244   67   69        1  1  0    "fasciculus retroflexus"
    49. 

  49.    61     0  255    0        1  1  0    "stria medullaris thalami"
    50. 

  50.    62   238  117   51        1  1  0    "stria terminalis"
    51. 

  51.    63   255    0  218        1  1  0    "posterior commissure"
    52. 

  52.    64    15  109  230        1  1  0    "Glomerular layer of the accessory olfactory bulb"
    53. 

  53.    65   255  227    0        1  1  0    "Glomerular layer of the olfactory bulb"
    54. 

  54.    66   255  135    0        1  1  0    "Olfactory bulb, unspecified"
    55. 

  55.    67   255  110    0        1  1  0    "corpus callosum and associated subcortical white matter"
    56. 

  56.    68   188   32  173        1  1  0    "brachium of the superior colliculus"
    57. 

  57.    69   255   42   39        1  1  0    "inferior colliculus, commissure"
    58. 

  58.    70    39  244  253        1  1  0    "Central canal"
    59. 

  59.    71    63  192  255        1  1  0    "Interpeduncular nucleus"
    60. 

  60.    72   179   28   53        1  1  0    "ascending fibers of the facial nerve"
    61. 

  61.    73   255   79  206        1  1  0    "anterior commissure, intrabulbar part"
    62. 

  62.    74     0  246   14        1  1  0    "Inferior olive"
    63. 

  63.    75    91  241  255        1  1  0    "Spinal trigeminal nucleus"
    64. 

  64.    76   250  128  114        1  1  0    "spinal trigeminal tract"
    65. 

  65.    77   206  211    7        1  1  0    "Frontal association cortex"
    66. 

  66.    78   134  204   76        1  1  0    "middle cerebellar peduncle"
    67. 

  67.    79   128  170  255        1  1  0    "transverse fibers of the pons"
    68. 

  68.    80    69  235  202        1  1  0    "habenular commissure"
    69. 

  69.    81   222    7  237        1  1  0    "Nucleus of the stria medullaris"
    70. 

  70.    82   225  240   13        1  1  0    "Basal forebrain region, unspecified"
    71. 

  71.    83   250  170   64        1  1  0    "supraoptic decussation"
    72. 

  72.    84    65  150  255        1  1  0    "medial lemniscus decussation"
    73. 

  73.    85   114    9  212        1  1  0    "pyramidal decussation"
    74. 

  74.    93     0    8  182        1  1  0    "Bed nucleus of the stria terminalis"
    75. 

  75.    94   255   87   30        1  1  0    "Pretectal region"
    76. 

  76.    95   165  131  107        1  1  0    "Cornu ammonis 3"
    77. 

  77.    96    91   45   10        1  1  0    "Dentate gyrus"
    78. 

  78.    97   255  255    0        1  1  0    "Cornu ammonis 2"
    79. 

  79.    98   217  104   13        1  1  0    "Cornu ammonis 1"
    80. 

  80.    99   255    0    0        1  1  0    "Fasciola cinereum"
    81. 

  81.   100   255  192    0        1  1  0    "Subiculum"
    82. 

  82.   108    40  112  130        1  1  0    "Postrhinal cortex"
    83. 

  83.   109    80  123  175        1  1  0    "Presubiculum"
    84. 

  84.   110    23   54   96        1  1  0    "Parasubiculum"
    85. 

  85.   112   205   51  255        1  1  0    "Perirhinal area 35"
    86. 

  86.   113   112   48  160        1  1  0    "Perirhinal area 36"
    87. 

  87.   114   122  187   51        1  1  0    "Medial entorhinal cortex"
    88. 

  88.   115    90  111   47        1  1  0    "Lateral entorhinal cortex"
    89. 

  89.   119     0  144   55        1  1  0    "Vestibular apparatus"
    90. 

  90.   120     0  255   28        1  1  0    "Cochlea"
    91. 

  91.   121   253  148    0        1  1  0    "Cochlear nerve"
    92. 

  92.   122   253   50    0        1  1  0    "Vestibular nerve"
    93. 

  93.   123     0   12  255        1  1  0    "Ventral cochlear nucleus, granule cell layer"
    94. 

  94.   125    52   29  144        1  1  0    "4th ventricle"
    95. 

  95.   126    92  156  211        1  1  0    "Dorsal cochlear nucleus, molecular layer"
    96. 

  96.   127     0   80  156        1  1  0    "Dorsal cochlear nucleus, fusiform and granule layer"
    97. 

  97.   128   197  238  255        1  1  0    "Dorsal cochlear nucleus, deep core"
    98. 

  98.   129   255  217    0        1  1  0    "acoustic striae"
    99. 

  99.   130   213  255    0        1  1  0    "trapezoid body"
    100. 

  100.   131     0  255   81        1  1  0    "Nucleus of the trapezoid body"
    101. 

  101.   132     0  238  255        1  1  0    "Superior paraolivary nucleus"
    102. 

  102.   133   219  239   61        1  1  0    "Medial superior olive"
    103. 

  103.   134    35   76  190        1  1  0    "Lateral superior olive"
    104. 

  104.   135     1  153   21        1  1  0    "Superior periolivary region"
    105. 

  105.   136     0  174  255        1  1  0    "Ventral periolivary nuclei"
    106. 

  106.   137   255    0  115        1  1  0    "Lateral lemniscus, ventral nucleus"
    107. 

  107.   138   171   16   91        1  1  0    "Lateral lemniscus, intermediate nucleus"
    108. 

  108.   139   108   18   91        1  1  0    "Lateral lemniscus, dorsal nucleus"
    109. 

  109.   140   255   29    0        1  1  0    "lateral lemniscus, commissure"
    110. 

  110.   141   255  166    0        1  1  0    "lateral lemniscus, unspecified"
    111. 

  111.   142   206  255  142        1  1  0    "Inferior colliculus, dorsal cortex"
    112. 

  112.   143     0  238  254        1  1  0    "Inferior colliculus, central nucleus"
    113. 

  113.   145    48  136  203        1  1  0    "Inferior colliculus, external cortex"
    114. 

  114.   146   176   58   72        1  1  0    "inferior colliculus, brachium"
    115. 

  115.   150   255   47  242        1  1  0    "Medial geniculate body, marginal zone"
    116. 

  116.   151   255  215    0        1  1  0    "Primary auditory area"
    117. 

  117.   152   240  255  255        1  1  0    "Secondary auditory area, dorsal part"
    118. 

  118.   153   216  191  216        1  1  0    "Secondary auditory area, ventral part"
    119. 

  119.   157   244  156  255        1  1  0    "external medullary lamina, auditory radiation"
    120. 

  120.   158    34  152  255        1  1  0    "Ventral cochlear nucleus, anterior part"
    121. 

  121.   159     0  230  207        1  1  0    "Ventral cochlear nucleus, posterior part"
    122. 

  122.   160     0  255  106        1  1  0    "Ventral cochlear nucleus, cap area"
    123. 

  123.   162   185  255  233        1  1  0    "Spiral ganglion"
    124. 

  124.   163    99  205    0        1  1  0    "Nucleus sagulum"
    125. 

  125.   164   110    0  255        1  1  0    "Reticular (pre)thalamic nucleus, auditory segment"
    126. 

  126.   180   255    0  221        1  1  0    "lateral olfactory tract"
    127. 

  127.   181     0  204  255        1  1  0    "Piriform cortex, layer 1"
    128. 

  128.   182     0    0  254        1  1  0    "Piriform cortex, layer 2"
    129. 

  129.   183   165  120  221        1  1  0    "Piriform cortex, layer 3"
    130. 

  130.   184   230  216  250        1  1  0    "Nucleus accumbens, core"
    131. 

  131.   187    99  197   18        1  1  0    "Substantia nigra, reticular part"
    132. 

  132.   188   255  255  127        1  1  0    "Substantia nigra, compact part"
    133. 

  133.   189     0  159  159        1  1  0    "Substantia nigra, lateral part"
    134. 

  134.   192    88   47  108        1  1  0    "Nucleus accumbens, shell"
    135. 

  135.   193     0  162  255        1  1  0    "Ventral pallidum"
    136. 

  136.   195   255   85  255        1  1  0    "Globus pallidus external, medial part"
    137. 

  137.   196   127  255  212        1  1  0    "Ventral tegmental area"
    138. 

  138.   197   129   79  155        1  1  0    "Caudate putamen"
    139. 

  139.   198   200   25  200        1  1  0    "Globus pallidus external, lateral part"
    140. 

  140.   199   220   20   60        1  1  0    "Ventral striatal region, unspecified"
    141. 

  141.   200     0  217  255        1  1  0    "Reticular (pre)thalamic nucleus, unspecified"
    142. 

  142.   201   183  199  136        1  1  0    "Peripeduncular nucleus"
    143. 

  143.   204   255   25    0        1  1  0    "Pregeniculate nucleus"
    144. 

  144.   205   255  226    0        1  1  0    "Dorsal lateral geniculate nucleus"
    145. 

  145.   206   217  108    0        1  1  0    "Lateral habenular nucleus"
    146. 

  146.   207   205    0   24        1  1  0    "Medial habenular nucleus"
    147. 

  147.   208   228  112  214        1  1  0    "Posterior intralaminar nucleus"
    148. 

  148.   210   255  255  200        1  1  0    "Posterior thalamic nuclear group, triangular part"
    149. 

  149.   211   205    0    6        1  1  0    "Parataenial thalamic nucleus"
    150. 

  150.   213   131   10  121        1  1  0    "Anterodorsal thalamic nucleus"
    151. 

  151.   214   239  121  218        1  1  0    "Anteroventral thalamic nucleus, dorsomedial part"
    152. 

  152.   215   101   35  142        1  1  0    "Anteroventral thalamic nucleus, ventrolateral part"
    153. 

  153.   216     0  255   17        1  1  0    "Rhomboid thalamic nucleus"
    154. 

  154.   218    35  255  236        1  1  0    "Xiphoid thalamic nucleus"
    155. 

  155.   219   255  170    0        1  1  0    "Reuniens thalamic nucleus"
    156. 

  156.   221     0  185  126        1  1  0    "Ventromedial thalamic nucleus"
    157. 

  157.   222   130    0  217        1  1  0    "Submedius thalamic nucleus"
    158. 

  158.   223   139   93  139        1  1  0    "Angular thalamic nucleus"
    159. 

  159.   227   255    0  254        1  1  0    "Ventral posteromedial thalamic nucleus"
    160. 

  160.   228   255  123    0        1  1  0    "Laterodorsal thalamic nucleus, dorsomedial part"
    161. 

  161.   229    43  153   31        1  1  0    "Laterodorsal thalamic nucleus, ventrolateral part"
    162. 

  162.   230   255  255    2        1  1  0    "Posterior thalamic nucleus"
    163. 

  163.   231   170  170  255        1  1  0    "Ventrolateral thalamic nucleus"
    164. 

  164.   232   255   85  127        1  1  0    "Mediodorsal thalamic nucleus, lateral part"
    165. 

  165.   233    85  170    0        1  1  0    "Mediodorsal thalamic nucleus, central part"
    166. 

  166.   235   216  191  217        1  1  0    "Zona incerta, dorsal part"
    167. 

  167.   236    75  200  138        1  1  0    "Zona incerta, ventral part"
    168. 

  168.   238   194   71   79        1  1  0    "Zona incerta, A13 dopamine cells"
    169. 

  169.   239   219  143  247        1  1  0    "pretectothalamic lamina"
    170. 

  170.   240   170  255  255        1  1  0    "Mediodorsal thalamic nucleus, medial part"
    171. 

  171.   242   156   51   51        1  1  0    "Paraventricular thalamic nuclei (anterior and posterior)"
    172. 

  172.   246   240  248  255        1  1  0    "Paracentral thalamic nucleus"
    173. 

  173.   247   224  182   64        1  1  0    "Central medial thalamic nucleus"
    174. 

  174.   248   153   50  204        1  1  0    "Central lateral thalamic nucleus"
    175. 

  175.   249   170  255    0        1  1  0    "external medullary lamina, unspecified"
    176. 

  176.   254     0   85  255        1  1  0    "Anteromedial thalamic nucleus"
    177. 

  177.   255   248  117  222        1  1  0    "Interanteromedial thalamic nucleus"
    178. 

  178.   257    30  144  255        1  1  0    "Zona incerta, rostral part"
    179. 

  179.   260   160   82   45        1  1  0    "Intermediodorsal thalamic nucleus"
    180. 

  180.   266     0  255    8        1  1  0    "Ventral posterior nucleus of the thalamus, parvicellular part"
    181. 

  181.   267   255  239  213        1  1  0    "Parafascicular thalamic nucleus"
    182. 

  182.   268     0    0  205        1  1  0    "Retroreuniens thalamic nucleus"
    183. 

  183.   270   210  182  140        1  1  0    "superior cerebellar peduncle and prerubral field"
    184. 

  184.   272     0    0  128        1  1  0    "Intergeniculate leaflet"
    185. 

  185.   278   233  150  122        1  1  0    "Subparafascicular nucleus"
    186. 

  186.   280   255  250  250        1  1  0    "Fields of Forel"
    187. 

  187.   281   147  112  219        1  1  0    "Subgeniculate nucleus"
    188. 

  188.   282   131   50  128        1  1  0    "Ethmoid-Limitans nucleus"
    189. 

  189.   283   199   87   61        1  1  0    "Lateral posterior thalamic nucleus, lateral part"
    190. 

  190.   284   255  182  193        1  1  0    "Zona incerta, A11 dopamine cells"
    191. 

  191.   285    60  179  113        1  1  0    "Lateral posterior thalamic nucleus, mediorostral part"
    192. 

  192.   286   255  235  205        1  1  0    "Lateral posterior thalamic nucleus, mediocaudal part"
    193. 

  193.   287   255  228  196        1  1  0    "Zona incerta, caudal part"
    194. 

  194.   290   155  148  111        1  1  0    "intramedullary thalamic area"
    195. 

  195.   291   255   92   10        1  1  0    "internal medullary lamina"
    196. 

  196.   293   255  136    0        1  1  0    "Ventral anterior thalamic nucleus"
    197. 

  197.   294   171   86   62        1  1  0    "Ventral posterolateral thalamic nucleus"
    198. 

  198.   295   239  163    0        1  1  0    "Medial geniculate body, dorsal division"
    199. 

  199.   297    10  244  217        1  1  0    "Medial geniculate body, medial division"
    200. 

  200.   298   131   58   31        1  1  0    "Medial geniculate body, ventral division"
    201. 

  201.   299    10  244  150        1  1  0    "Medial geniculate body, suprageniculate nucleus"
    202. 

  202.   400   255    0    1        1  1  0    "Ventrolateral orbital area"
    203. 

  203.   401   255  174  201        1  1  0    "Lateral orbital area"
    204. 

  204.   402   200  191  231        1  1  0    "Ventral orbital area"
    205. 

  205.   403    63   72  204        1  1  0    "Medial orbital area"
    206. 

  206.   404   185  122   87        1  1  0    "Dorsolateral orbital area"
    207. 

  207.   405   163   73  164        1  1  0    "Prelimbic area"
    208. 

  208.   406     0  162  232        1  1  0    "Secondary motor area"
    209. 

  209.   407   136    0   21        1  1  0    "Frontal association area 3"
    210. 

  210.   408   153  217  234        1  1  0    "Primary motor area"
    211. 

  211.   409   255  201   14        1  1  0    "Agranular insular cortex, ventral area"
    212. 

  212.   410   255  127   39        1  1  0    "Agranular insular cortex dorsal area "
    213. 

  213.   411     0  128  128        1  1  0    "Cingulate area 1"
    214. 

  214.   412   153  217  200        1  1  0    "Claustrum"
    215. 

  215.   413    34  177   76        1  1  0    "Infralimbic area"
    216. 

  216.   414   255  242    0        1  1  0    "Dysgranular insular cortex"
    217. 

  217.   416   239  228  176        1  1  0    "Granular insular cortex"
    218. 

  218.   417   185   14  131        1  1  0    "Primary somatosensory area, forelimb representation"
    219. 

  219.   418   237   28   36        1  1  0    "Primary somatosensory area, dysgranular zone"
    220. 

  220.   420   255  128  192        1  1  0    "Primary somatosensory area, face representation"
    221. 

  221.   422   200  100  250        1  1  0    "Secondary somatosensory area"
    222. 

  222.   423   136  100   21        1  1  0    "Primary somatosensory area, hindlimb representation"
    223. 

  223.   424   181  230   29        1  1  0    "Agranular insular cortex, posterior area "
    224. 

  224.   425   120  177   76        1  1  0    "Primary somatosensory area, barrel field"
    225. 

  225.   427   200   73  164        1  1  0    "Retrosplenial dysgranular area"
    226. 

  226.   429   225  150  201        1  1  0    "Primary somatosensory area, trunk representation"
    227. 

  227.   430    25  100  200        1  1  0    "Retrosplenial granular area"
    228. 

  228.   432   255  240   29        1  1  0    "Parietal association cortex, lateral area"
    229. 

  229.   433   108    0  108        1  1  0    "Parietal association cortex, medial area"
    230. 

  230.   436   128    0   64        1  1  0    "Parietal association cortex, posterior area "
    231. 

  231.   442    84   52   35        1  1  0    "Primary visual area"
    232. 

  232.   443   255  100  100        1  1  0    "Secondary visual area, lateral part"
    233. 

  233.   444     0  128    0        1  1  0    "Temporal association cortex"
    234. 

  234.   448   128    0  100        1  1  0    "Secondary visual area, medial part"
    235. 

  235.   500     1   10  100        1  1  0    "Endopiriform nucleus"
    236. 

  236.   501     2   20  200        1  1  0    "Amygdaloid area, unspecified"
    237. 

  237.   502   230  184   67        1  1  0    "Nucleus of the lateral olfactory tract"
    238.