################################################ # ITK-SnAP Label Description File # File format: # IDX -R- -G- -B- -A-- VIS MSH LABEL # Fields: # IDX: Zero-based index # -R-: Red color component (0..255) # -G-: Green color component (0..255) # -B-: Blue color component (0..255) # -A-: Label transparency (0.00 .. 1.00) # VIS: Label visibility (0 or 1) # IDX: Label mesh visibility (0 or 1) # LABEL: Label description ################################################ 0 0 0 0 0 0 0 "Clear Label" 1 255 52 39 1 1 0 "corticofugal tract and corona radiata" 3 0 0 255 1 1 0 "Subthalamic nucleus" 4 255 255 1 1 1 0 "Molecular cell layer of the cerebellum" 5 0 255 255 1 1 0 "Cerebellum, unspecified" 6 255 0 255 1 1 0 "alveus of the hippocampus" 7 52 255 13 1 1 0 "inferior cerebellar peduncle" 10 29 104 235 1 1 0 "Cingulate area 2" 32 26 231 255 1 1 0 "Entopeduncular nucleus" 33 2 44 255 1 1 0 "Ventricular system, unspecified" 34 212 255 0 1 1 0 "medial lemniscus, unspecified" 35 255 25 240 1 1 0 "facial nerve, unspecified" 36 124 252 0 1 1 0 "anterior commissure, anterior limb" 37 255 186 0 1 1 0 "anterior commissure, posterior limb" 38 174 0 232 1 1 0 "ventral hippocampal commissure" 40 255 8 0 1 1 0 "Septal region" 41 48 218 0 1 1 0 "optic nerve" 42 38 126 255 1 1 0 "optic tract and optic chiasm" 43 218 170 62 1 1 0 "Pineal gland" 45 134 255 90 1 1 0 "Spinal cord" 46 33 230 255 1 1 0 "commissure of the superior colliculus" 47 153 83 255 1 1 0 "Brainstem, unspecified" 48 226 120 161 1 1 0 "Hypothalamic region, unspecified" 50 86 0 221 1 1 0 "Superficial gray layer of the superior colliculus" 51 7 255 89 1 1 0 "Periaqueductal gray" 52 21 192 255 1 1 0 "fornix" 53 238 186 0 1 1 0 "mammillotegmental tract" 54 173 255 47 1 1 0 "commissural stria terminalis" 55 225 151 15 1 1 0 "Deeper layers of the superior colliculus" 56 235 87 255 1 1 0 "Periventricular gray" 57 250 244 247 1 1 0 "genu of the facial nerve" 58 0 215 11 1 1 0 "Pontine nuclei" 59 0 255 29 1 1 0 "fimbria of the hippocampus" 60 244 67 69 1 1 0 "fasciculus retroflexus" 61 0 255 0 1 1 0 "stria medullaris thalami" 62 238 117 51 1 1 0 "stria terminalis" 63 255 0 218 1 1 0 "posterior commissure" 64 15 109 230 1 1 0 "Glomerular layer of the accessory olfactory bulb" 65 255 227 0 1 1 0 "Glomerular layer of the olfactory bulb" 66 255 135 0 1 1 0 "Olfactory bulb, unspecified" 67 255 110 0 1 1 0 "corpus callosum and associated subcortical white matter" 68 188 32 173 1 1 0 "brachium of the superior colliculus" 69 255 42 39 1 1 0 "inferior colliculus, commissure" 70 39 244 253 1 1 0 "Central canal" 71 63 192 255 1 1 0 "Interpeduncular nucleus" 72 179 28 53 1 1 0 "ascending fibers of the facial nerve" 73 255 79 206 1 1 0 "anterior commissure, intrabulbar part" 74 0 246 14 1 1 0 "Inferior olive" 75 91 241 255 1 1 0 "Spinal trigeminal nucleus" 76 250 128 114 1 1 0 "spinal trigeminal tract" 77 206 211 7 1 1 0 "Frontal association cortex" 78 134 204 76 1 1 0 "middle cerebellar peduncle" 79 128 170 255 1 1 0 "transverse fibers of the pons" 80 69 235 202 1 1 0 "habenular commissure" 81 222 7 237 1 1 0 "Nucleus of the stria medullaris" 82 225 240 13 1 1 0 "Basal forebrain region, unspecified" 83 250 170 64 1 1 0 "supraoptic decussation" 84 65 150 255 1 1 0 "medial lemniscus decussation" 85 114 9 212 1 1 0 "pyramidal decussation" 93 0 8 182 1 1 0 "Bed nucleus of the stria terminalis" 94 255 87 30 1 1 0 "Pretectal region" 95 165 131 107 1 1 0 "Cornu ammonis 3" 96 91 45 10 1 1 0 "Dentate gyrus" 97 255 255 0 1 1 0 "Cornu ammonis 2" 98 217 104 13 1 1 0 "Cornu ammonis 1" 99 255 0 0 1 1 0 "Fasciola cinereum" 100 255 192 0 1 1 0 "Subiculum" 108 40 112 130 1 1 0 "Postrhinal cortex" 109 80 123 175 1 1 0 "Presubiculum" 110 23 54 96 1 1 0 "Parasubiculum" 112 205 51 255 1 1 0 "Perirhinal area 35" 113 112 48 160 1 1 0 "Perirhinal area 36" 114 122 187 51 1 1 0 "Medial entorhinal cortex" 115 90 111 47 1 1 0 "Lateral entorhinal cortex" 119 0 144 55 1 1 0 "Vestibular apparatus" 120 0 255 28 1 1 0 "Cochlea" 121 253 148 0 1 1 0 "Cochlear nerve" 122 253 50 0 1 1 0 "Vestibular nerve" 123 0 12 255 1 1 0 "Ventral cochlear nucleus, granule cell layer" 125 52 29 144 1 1 0 "4th ventricle" 126 92 156 211 1 1 0 "Dorsal cochlear nucleus, molecular layer" 127 0 80 156 1 1 0 "Dorsal cochlear nucleus, fusiform and granule layer" 128 197 238 255 1 1 0 "Dorsal cochlear nucleus, deep core" 129 255 217 0 1 1 0 "acoustic striae" 130 213 255 0 1 1 0 "trapezoid body" 131 0 255 81 1 1 0 "Nucleus of the trapezoid body" 132 0 238 255 1 1 0 "Superior paraolivary nucleus" 133 219 239 61 1 1 0 "Medial superior olive" 134 35 76 190 1 1 0 "Lateral superior olive" 135 1 153 21 1 1 0 "Superior periolivary region" 136 0 174 255 1 1 0 "Ventral periolivary nuclei" 137 255 0 115 1 1 0 "Lateral lemniscus, ventral nucleus" 138 171 16 91 1 1 0 "Lateral lemniscus, intermediate nucleus" 139 108 18 91 1 1 0 "Lateral lemniscus, dorsal nucleus" 140 255 29 0 1 1 0 "lateral lemniscus, commissure" 141 255 166 0 1 1 0 "lateral lemniscus, unspecified" 142 206 255 142 1 1 0 "Inferior colliculus, dorsal cortex" 143 0 238 254 1 1 0 "Inferior colliculus, central nucleus" 145 48 136 203 1 1 0 "Inferior colliculus, external cortex" 146 176 58 72 1 1 0 "inferior colliculus, brachium" 150 255 47 242 1 1 0 "Medial geniculate body, marginal zone" 151 255 215 0 1 1 0 "Primary auditory area" 152 240 255 255 1 1 0 "Secondary auditory area, dorsal part" 153 216 191 216 1 1 0 "Secondary auditory area, ventral part" 157 244 156 255 1 1 0 "external medullary lamina, auditory radiation" 158 34 152 255 1 1 0 "Ventral cochlear nucleus, anterior part" 159 0 230 207 1 1 0 "Ventral cochlear nucleus, posterior part" 160 0 255 106 1 1 0 "Ventral cochlear nucleus, cap area" 162 185 255 233 1 1 0 "Spiral ganglion" 163 99 205 0 1 1 0 "Nucleus sagulum" 164 110 0 255 1 1 0 "Reticular (pre)thalamic nucleus, auditory segment" 180 255 0 221 1 1 0 "lateral olfactory tract" 181 0 204 255 1 1 0 "Piriform cortex, layer 1" 182 0 0 254 1 1 0 "Piriform cortex, layer 2" 183 165 120 221 1 1 0 "Piriform cortex, layer 3" 184 230 216 250 1 1 0 "Nucleus accumbens, core" 187 99 197 18 1 1 0 "Substantia nigra, reticular part" 188 255 255 127 1 1 0 "Substantia nigra, compact part" 189 0 159 159 1 1 0 "Substantia nigra, lateral part" 192 88 47 108 1 1 0 "Nucleus accumbens, shell" 193 0 162 255 1 1 0 "Ventral pallidum" 195 255 85 255 1 1 0 "Globus pallidus external, medial part" 196 127 255 212 1 1 0 "Ventral tegmental area" 197 129 79 155 1 1 0 "Caudate putamen" 198 200 25 200 1 1 0 "Globus pallidus external, lateral part" 199 220 20 60 1 1 0 "Ventral striatal region, unspecified" 200 0 217 255 1 1 0 "Reticular (pre)thalamic nucleus, unspecified" 201 183 199 136 1 1 0 "Peripeduncular nucleus" 204 255 25 0 1 1 0 "Pregeniculate nucleus" 205 255 226 0 1 1 0 "Dorsal lateral geniculate nucleus" 206 217 108 0 1 1 0 "Lateral habenular nucleus" 207 205 0 24 1 1 0 "Medial habenular nucleus" 208 228 112 214 1 1 0 "Posterior intralaminar nucleus" 210 255 255 200 1 1 0 "Posterior thalamic nuclear group, triangular part" 211 205 0 6 1 1 0 "Parataenial thalamic nucleus" 213 131 10 121 1 1 0 "Anterodorsal thalamic nucleus" 214 239 121 218 1 1 0 "Anteroventral thalamic nucleus, dorsomedial part" 215 101 35 142 1 1 0 "Anteroventral thalamic nucleus, ventrolateral part" 216 0 255 17 1 1 0 "Rhomboid thalamic nucleus" 218 35 255 236 1 1 0 "Xiphoid thalamic nucleus" 219 255 170 0 1 1 0 "Reuniens thalamic nucleus" 221 0 185 126 1 1 0 "Ventromedial thalamic nucleus" 222 130 0 217 1 1 0 "Submedius thalamic nucleus" 223 139 93 139 1 1 0 "Angular thalamic nucleus" 227 255 0 254 1 1 0 "Ventral posteromedial thalamic nucleus" 228 255 123 0 1 1 0 "Laterodorsal thalamic nucleus, dorsomedial part" 229 43 153 31 1 1 0 "Laterodorsal thalamic nucleus, ventrolateral part" 230 255 255 2 1 1 0 "Posterior thalamic nucleus" 231 170 170 255 1 1 0 "Ventrolateral thalamic nucleus" 232 255 85 127 1 1 0 "Mediodorsal thalamic nucleus, lateral part" 233 85 170 0 1 1 0 "Mediodorsal thalamic nucleus, central part" 235 216 191 217 1 1 0 "Zona incerta, dorsal part" 236 75 200 138 1 1 0 "Zona incerta, ventral part" 238 194 71 79 1 1 0 "Zona incerta, A13 dopamine cells" 239 219 143 247 1 1 0 "pretectothalamic lamina" 240 170 255 255 1 1 0 "Mediodorsal thalamic nucleus, medial part" 242 156 51 51 1 1 0 "Paraventricular thalamic nuclei (anterior and posterior)" 246 240 248 255 1 1 0 "Paracentral thalamic nucleus" 247 224 182 64 1 1 0 "Central medial thalamic nucleus" 248 153 50 204 1 1 0 "Central lateral thalamic nucleus" 249 170 255 0 1 1 0 "external medullary lamina, unspecified" 254 0 85 255 1 1 0 "Anteromedial thalamic nucleus" 255 248 117 222 1 1 0 "Interanteromedial thalamic nucleus" 257 30 144 255 1 1 0 "Zona incerta, rostral part" 260 160 82 45 1 1 0 "Intermediodorsal thalamic nucleus" 266 0 255 8 1 1 0 "Ventral posterior nucleus of the thalamus, parvicellular part" 267 255 239 213 1 1 0 "Parafascicular thalamic nucleus" 268 0 0 205 1 1 0 "Retroreuniens thalamic nucleus" 270 210 182 140 1 1 0 "superior cerebellar peduncle and prerubral field" 272 0 0 128 1 1 0 "Intergeniculate leaflet" 278 233 150 122 1 1 0 "Subparafascicular nucleus" 280 255 250 250 1 1 0 "Fields of Forel" 281 147 112 219 1 1 0 "Subgeniculate nucleus" 282 131 50 128 1 1 0 "Ethmoid-Limitans nucleus" 283 199 87 61 1 1 0 "Lateral posterior thalamic nucleus, lateral part" 284 255 182 193 1 1 0 "Zona incerta, A11 dopamine cells" 285 60 179 113 1 1 0 "Lateral posterior thalamic nucleus, mediorostral part" 286 255 235 205 1 1 0 "Lateral posterior thalamic nucleus, mediocaudal part" 287 255 228 196 1 1 0 "Zona incerta, caudal part" 290 155 148 111 1 1 0 "intramedullary thalamic area" 291 255 92 10 1 1 0 "internal medullary lamina" 293 255 136 0 1 1 0 "Ventral anterior thalamic nucleus" 294 171 86 62 1 1 0 "Ventral posterolateral thalamic nucleus" 295 239 163 0 1 1 0 "Medial geniculate body, dorsal division" 297 10 244 217 1 1 0 "Medial geniculate body, medial division" 298 131 58 31 1 1 0 "Medial geniculate body, ventral division" 299 10 244 150 1 1 0 "Medial geniculate body, suprageniculate nucleus" 400 255 0 1 1 1 0 "Ventrolateral orbital area" 401 255 174 201 1 1 0 "Lateral orbital area" 402 200 191 231 1 1 0 "Ventral orbital area" 403 63 72 204 1 1 0 "Medial orbital area" 404 185 122 87 1 1 0 "Dorsolateral orbital area" 405 163 73 164 1 1 0 "Prelimbic area" 406 0 162 232 1 1 0 "Secondary motor area" 407 136 0 21 1 1 0 "Frontal association area 3" 408 153 217 234 1 1 0 "Primary motor area" 409 255 201 14 1 1 0 "Agranular insular cortex, ventral area" 410 255 127 39 1 1 0 "Agranular insular cortex dorsal area " 411 0 128 128 1 1 0 "Cingulate area 1" 412 153 217 200 1 1 0 "Claustrum" 413 34 177 76 1 1 0 "Infralimbic area" 414 255 242 0 1 1 0 "Dysgranular insular cortex" 416 239 228 176 1 1 0 "Granular insular cortex" 417 185 14 131 1 1 0 "Primary somatosensory area, forelimb representation" 418 237 28 36 1 1 0 "Primary somatosensory area, dysgranular zone" 420 255 128 192 1 1 0 "Primary somatosensory area, face representation" 422 200 100 250 1 1 0 "Secondary somatosensory area" 423 136 100 21 1 1 0 "Primary somatosensory area, hindlimb representation" 424 181 230 29 1 1 0 "Agranular insular cortex, posterior area " 425 120 177 76 1 1 0 "Primary somatosensory area, barrel field" 427 200 73 164 1 1 0 "Retrosplenial dysgranular area" 429 225 150 201 1 1 0 "Primary somatosensory area, trunk representation" 430 25 100 200 1 1 0 "Retrosplenial granular area" 432 255 240 29 1 1 0 "Parietal association cortex, lateral area" 433 108 0 108 1 1 0 "Parietal association cortex, medial area" 436 128 0 64 1 1 0 "Parietal association cortex, posterior area " 442 84 52 35 1 1 0 "Primary visual area" 443 255 100 100 1 1 0 "Secondary visual area, lateral part" 444 0 128 0 1 1 0 "Temporal association cortex" 448 128 0 100 1 1 0 "Secondary visual area, medial part" 500 1 10 100 1 1 0 "Endopiriform nucleus" 501 2 20 200 1 1 0 "Amygdaloid area, unspecified" 502 230 184 67 1 1 0 "Nucleus of the lateral olfactory tract"