NHP_VisualSearch_Pop-in/DATA/Datasets/M1/log/M1_20141007_B002/M1_20141007_B002_runstim.m

function runstim(Hnd) %#ok<FNDEF>

global Par   %global parameters
global LPStat  %das status values
global STIM

Par.TrainSession = false; 
% set to false for recording sessions !
% it will allow more control over file-naming
% files will get a default name if set to true (see line 52 and later)

%Difficulty =================================================
% CK20140128: Timing is taken from par file but overwritten by
% CK20140128: values from the settings file in this runstim
load('PAR_HICKEY.mat'); % load the default parameter-file 
% (maybe we can remove this later, but default Tracker relies on some settings)

LOG.DefMonkeyName = 'Duvel'; % default monkey name used in creating a filename
% can be overruled in filename when it's set through the dialog

% Load settings file
LOG.SettingsFile = 'HICKEY_SETTINGS_Duvel';
eval(LOG.SettingsFile);
LOG.SettingsFileFull = fullfile(pwd,[LOG.SettingsFile '.m']);

Par.Trlcount = 0; %reset trialcount to 0
% Every time you press run, Tracker will generate a unique list of stimuli
% and conditions. If we continue the trialcount over repeated runs the
% references to conditions won't work anymore. THis automatically means
% that for every time you press run, there will be a separate log file
% saved. There should also be a matching TDT file, so always  stop and start 
% TDT and Tracker together.

% Save stuff in this version
cc=clock; % get time info from the system clock
LOG.datestr=[sprintf('%04d',cc(1)) sprintf('%02d',cc(2)) ...
    sprintf('%02d',cc(3))]; % YYYYMMDD
LOG.timestr=[sprintf('%02d',cc(4)) sprintf('%02d',cc(5)) ...
    sprintf('%02d',round(cc(6)))]; % HHMMSS

% Create a random number in the largest range that can be encoded using 14 bits
% We will send this as a word bit to TDT as an extra check when matching up
% our TDT data-file and the Tracker-log. THis is in addition to consistent
% filenaming.
LOG.uniqueID = round(rand(1).*2^14); 
dasword(LOG.uniqueID);
pause(.05); % make sure the word is received
dasclearword();
WordsSent=1; %keep track of how many words are sent so we back-check TDT against the log
LOG.Words(WordsSent)=LOG.uniqueID; %collect all the words that are sent to TDT

% Create a filename Monkeyname_YYYYMMDD_B#
if Par.TrainSession
    fnLead = [LOG.DefMonkeyName '_' LOG.datestr '_TRAIN' ]; 
    % Training- and Recording sessions will be saved under different names
else
    fnLead = [LOG.DefMonkeyName '_' LOG.datestr '_B' ];
    % this filename construction is convention for TDT as well
end

% look for log files with this date and find the lowest new block nr
% will only check for files that follow the filename convention
% MonkeyName_YYYYMMDD_Bx.mat (where x=blocknr)
cd LOG; % go to log folder
prevfiles=dir([fnLead '*']);
% Assuming the last file has the highest blocknr
% as it should when naming conventions are followed
if ~isempty(prevfiles)
    CurrBlockNr = str2num(prevfiles(end).name(end))+1; %#ok<*ST2NM>
else
    CurrBlockNr = 1;
end
cd ..

% create an input dialog for setting the filename
% suggest a default name based on the files that are already present
LOG.FileNameSug = [fnLead sprintf('%03d',CurrBlockNr)];
if ~Par.TrainSession
    LOG.FileName = inputdlg(...
        'Start a new TDT block and set filename for Tracker-log consistently\n',...
        'Filename',1,{LOG.FileNameSug});
    % take input name on 'ok', suggested name on 'cancel'
    if ~isempty(LOG.FileName)
        LOG.FileName = LOG.FileName{1};
    else
        LOG.FileName = LOG.FileNameSug;
    end
else
    LOG.FileName = LOG.FileNameSug;
end

% Create an empty screen
BG = STIM.BackCol; %background Color
cgflip(BG(1), BG(2), BG(3)) %flip the videobuffer
nf=1; %keep track of number of flips
nfr=100; %refresh tracker every nfr frame flips

%timing ====================================================
% Timing from the Settings-file are used
PREFIXT = STIM.PreFixT; % time allowed to initiate fixation
FIXT = STIM.FixT; % duration to hold fixation before stimuli appear
TARGT = STIM.KeepFixT; % Duration to hold fixation while stimuli are on the screen
RACT = STIM.ReacT; % Time allowed to select a target after target onset
SACCT= STIM.SaccT; % Allowed saccade time between leaving fixwin and entering targwin
ISI = STIM.ISI; % interstimulus interval
ISI_R = STIM.ISI_RAND; % max random addition to ISI 
ERRT = STIM.ErrT; % punishment addition to ISI after error trial

%Stimulus information ======================================
%Fixation dot size and location in pixels
FixPosPix = STIM.FixPos*Par.PixPerDeg;
px = FixPosPix(1); py = FixPosPix(2);
Fsz = STIM.FixSz.*Par.PixPerDeg;
TargSz = STIM.TarSz.*Par.PixPerDeg;

%Windowing information =====================================
% Info will be read from the settings file upon 'run'
% but can be altered in the parameters tab
Par.FixWdDeg = STIM.FixWinSz(1);
Par.FixHtDeg = STIM.FixWinSz(2);
Par.TargWdDeg = STIM.TarWinSz(1);
Par.TargHtDeg = STIM.TarWinSz(2);

%Make targets & distractors ----------------------
targx = STIM.TarPos(:,1)'.*Par.PixPerDeg; % x-coordinates
targy = STIM.TarPos(:,2)'.*Par.PixPerDeg; % y-coordinates

%////YOUR STIMULATION CONTROL LOOP /////////////////////////////////
Hit = 2;
Par.ESC = false; %escape has not been pressed
Par.Distcount = 0; %also count the number of times the distractor was selected 
TrialNr=0; % this is the index to rows in the triallist STIM.TrialList
% it will increase when a new trial needs to be defined and stay the same
% if a trial needs to be repeated. NB! this is not the same as the trial
% count, which keep track of the number of started trials
LOG.TotRew = 0; %keep track of earned total reward (excluding manual rewards)

while ~Par.ESC
    %Pretrial
    %SETUP YOUR STIMULI FOR THIS TRIAL
    if Par.Drum && Hit ~= 2 %if drumming and this was an error trial
        %just redo with current settings
    else
        TrialNr=TrialNr+1;
        % CK20140128: This whole procedure is unflexible
        % CK20140128: I re-wrote it completely
        TrialTypeNo=STIM.TrialList(TrialNr,1);
        % be careful with referencing via Par.Trlcount
      
        % control window setup
        % 0 = fixation, 2 = target
        WIN=zeros(STIM.TarN+1,5);
        
        WIN(1,:)=[Par.PixPerDeg*STIM.FixPos(1),Par.PixPerDeg*STIM.FixPos(2),...
            Par.PixPerDeg*Par.FixWdDeg, Par.PixPerDeg*Par.FixHtDeg, 0];
        
        for i=1:STIM.TarN
            WIN(i+1,:)=[Par.PixPerDeg*STIM.TarPos(i,1),Par.PixPerDeg*STIM.TarPos(i,2), ...
                Par.PixPerDeg*Par.TargWdDeg, Par.PixPerDeg*Par.TargHtDeg, 1];
        end
        % which is the target?
        WIN(STIM.TrialTypes(TrialTypeNo,1)+1,5)=2;
        
        Par.WIN = WIN';
    end
    
    %/////////////////////////////////////////////////////////////////////
    %START THE TRIAL
    %set control window positions and dimensions
    refreshtracker(1) %for your control display
    SetWindowDas      %for the dascard
    Abort = false;    %whether subject has aborted before end of trial
    
    % sent trial number as word
    dasword(TrialNr); 
    % TrialNr is the row index in STIM.TrialList for the prepared
    % next trial. In this row STIM.TrialList defines the stimuus array as:
    % # STIM.TrialList(TrialNr,1) = TrialType, which in turn indexes a
    % row in STIM.TrialTypes where c1 is target location, c2 is target
    % shape (1=circle, 2=square), and c3 is distractor location
    % # STIM.TrialList(TrialNr,2) = Index to STIM.ColSchemes that
    % defines the RGB values for target, distractor and non-targets
    % # STIM.TrialList(TrialNr,3) = Index to STIM.RewardValues to
    % dissociate between high and low rewarded trials.
    WordsSent=WordsSent+1;
    LOG.Words(WordsSent)=TrialNr;
    
    %///////// EVENT 0 START FIXATING//////////////////////////////////////
    
    cgellipse(px,py,Fsz,Fsz,STIM.FixCol_NoGo,'f') %the red fixation dot on the screen
    cgflip(BG(1), BG(2), BG(3))
    nf=nf+1;
    
    dasreset(0);   %test enter fix window
    %     0 enter fix window
    %     1 leave fix window
    %     2 enter target window
    
    %subject has to start fixating central dot
    Par.SetZero = false; %set key to false to remove previous presses
    %Par.Updatxy = 1; %centering key is enabled
    Time = 1;
    Hit = 0;
    while Time < PREFIXT && Hit == 0
        %dasrun(5)
        [Hit Time] = DasCheck; %#ok<*NCOMMA> %retrieve position values and plot on Control display
        if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
    end
    %disp( [num2str(hitbreak) '  enter  ' num2str(toc)])
    
    %///////// EVENT 1 KEEP FIXATING or REDO  ////////////////////////////////////
    if Hit ~= 0  %subjects eyes are in fixation window keep fixating for FIX time
        dasreset(1);     %set test parameters for exiting fix window
        
        Time = 1;
        Hit = 0;
        while Time < FIXT && Hit== 0
            %Check for 10 ms
            %dasrun(5)
            [Hit Time] = DasCheck; %retrieve eyechannel buffer and events, plot eye motion,
            if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
        end
        
        if Hit ~= 0 %eye has left fixation to early
            %possibly due to eye overshoot, give another chance
            dasreset(0);
            Time = 1;
            Hit = 0;
            while Time < PREFIXT && Hit == 0
                %dasrun(5)
                [Hit Time] = DasCheck; %retrieve position values and plot on Control display
                if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
            end
            if Hit ~= 0  %subjects eyes are in fixation window keep fixating for FIX time
                dasreset( 1);     %test for exiting fix window
                
                Time = 1;
                Hit = 0;
                while Time < FIXT && Hit == 0
                    %Check for 10 ms
                    %                     pause(0.005)
                    %dasrun(5)
                    [Hit Time] = DasCheck;
                    if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
                end
            else
                Hit = -1; %the subject did not fixate
            end
        end
        
    else
        Hit = -1; %the subject did not fixate
    end
    
    %       LPP = dasrun 10);
    %       setdatatype(LPP, 'int32Ptr', 2, 1)
    %       display(LPP.Value)
    
    %///////// EVENT 2 DISPLAY STIMULUS //////////////////////////////////////
    if Hit == 0 %subject kept fixation, display stimulus
        Par.Trlcount = Par.Trlcount + 1;  %counts total number of trials for this session
        % a trial is only counted when prefix is fullfilled
        % as long as no stimulus is shown, it's still the same trial
        
        % since this trial is started and the trial count updated: 
        % log extensive info for this trial
        LOG.Trial(Par.Trlcount).TrialNr = TrialNr; 
        LOG.Trial(Par.Trlcount).TrialCnt = Par.Trlcount; 
        LOG.Trial(Par.Trlcount).TrialTypeNo = TrialTypeNo;
        LOG.Trial(Par.Trlcount).WordsSent = WordsSent;
        LOG.Trial(Par.Trlcount).LastWord = LOG.Words(WordsSent);
        LOG.Trial(Par.Trlcount).TarPos = STIM.TrialTypes(STIM.TrialList(TrialNr,1),1);
        LOG.Trial(Par.Trlcount).TarShape = STIM.TrialTypes(STIM.TrialList(TrialNr,1),2);
        LOG.Trial(Par.Trlcount).DistPos = STIM.TrialTypes(STIM.TrialList(TrialNr,1),3);
        LOG.Trial(Par.Trlcount).ColScheme = STIM.TrialList(TrialNr,2);
        LOG.Trial(Par.Trlcount).RewValue = STIM.RewardValues(STIM.TrialList(TrialNr,3));

        % draw stimuli
        for s = 1:STIM.TarN
            if s==STIM.TrialTypes(TrialTypeNo,1) %this is the target
                if STIM.TrialTypes(TrialTypeNo,2) == 1 % target is circle
                    cgellipse(targx(s),targy(s),...
                        TargSz,TargSz,STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColCorr,'f');
                else % target is rect
                    cgrect(targx(s),targy(s),...
                        sqrt(pi.*((TargSz/2).^2)),sqrt(pi.*((TargSz/2).^2)),...
                        STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColCorr);
                end
            elseif s==STIM.TrialTypes(TrialTypeNo,3) %this is the salient non-target
                if STIM.TrialTypes(TrialTypeNo,2) == 1 % target is circle
                    cgrect(targx(s),targy(s),...
                        sqrt(pi.*((TargSz/2).^2)),sqrt(pi.*((TargSz/2).^2)),...
                        STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_Sal);
                else % target is rect
                    cgellipse(targx(s),targy(s),...
                        TargSz,TargSz,STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_Sal,'f');
                end
            else % normal non-target
                if STIM.TrialTypes(TrialTypeNo,2) == 1 % target is circle
                    cgrect(targx(s),targy(s),...
                        sqrt(pi.*((TargSz/2).^2)),sqrt(pi.*((TargSz/2).^2)),...
                        STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_NonSal);
                else % target is rect
                    cgellipse(targx(s),targy(s),...
                        TargSz,TargSz,STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_NonSal,'f');
                end
            end
        end
        
        cgellipse(px,py,Fsz,Fsz,STIM.FixCol_NoGo,'f') %the red fixation dot on the screen
        FO = cgflip(BG(1), BG(2), BG(3));
        nf=nf+1;
        
        dasbit(Par.StimB, 1); % set the stim channel in TDT to 1 to allow stimulus onset reconstruction
        %dasbit(  Par.MicroB, 1);
        tic  %measure onset to
        %..............................................................
        
        dasreset(1); %test for exiting fix window
        refreshtracker(2)
        Time = 0;
        %StimFlg = true;
        
        while Time < TARGT  && Hit == 0  %Keep fixating till target onset
            if TARGT - Time < 5
                %dasrun(5)
                %don't plot any more, so we immediately break from loop
                Hit = LPStat(2);
                break
            else
                %Check for 5 ms
                %dasrun(5)
                %get hit time and plot eyemotion
                [Hit Time] = DasCheck;
                if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
            end
        end
        
%         if 0 % Never executed? For debugging? [CK]
%             %..............................................................
%             %%%%%%
%             %how much time(ms) do we have left till target onset???
%             delay = floor(TARGT + 5 * FLtime - toc*1000 - 5); %hold up calling the next flip
%             if delay > 0
%                 dasrun(delay)
%                 Hit = LPStat(2);  %don't wast time!!!! on updating the screen
%             end
%         end
        
        %///////// EVENT 3 TARGET ONSET, REACTION TIME%%//////////////////////////////////////
        
        if Hit == 0 %subject kept fixation, subject may make an eye movement
            %Draw targets
            for s = 1:STIM.TarN
                if s==STIM.TrialTypes(TrialTypeNo,1) %this is the target
                    if STIM.TrialTypes(TrialTypeNo,2) == 1 % target is circle
                        cgellipse(targx(s),targy(s),...
                            TargSz,TargSz,STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColCorr,'f');
                    else % target is rect
                        cgrect(targx(s),targy(s),...
                            sqrt(pi.*((TargSz/2).^2)),sqrt(pi.*((TargSz/2).^2)),...
                            STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColCorr);
                    end
                elseif s==STIM.TrialTypes(TrialTypeNo,3) %this is the salient non-target
                    if STIM.TrialTypes(TrialTypeNo,2) == 1 % target is circle
                        cgrect(targx(s),targy(s),...
                            sqrt(pi.*((TargSz/2).^2)),sqrt(pi.*((TargSz/2).^2)),...
                            STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_Sal);
                    else % target is rect
                        cgellipse(targx(s),targy(s),...
                            TargSz,TargSz,STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_Sal,'f');
                    end
                else % normal non-target
                    if STIM.TrialTypes(TrialTypeNo,2) == 1 % target is circle
                        cgrect(targx(s),targy(s),...
                            sqrt(pi.*((TargSz/2).^2)),sqrt(pi.*((TargSz/2).^2)),...
                            STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_NonSal);
                    else % target is rect
                        cgellipse(targx(s),targy(s),...
                            TargSz,TargSz,STIM.ColSchemes(STIM.TrialList(TrialNr,2)).TargColErr_NonSal,'f');
                    end
                end
            end
            cgellipse(px,py,Fsz,Fsz,STIM.FixCol_Go,'f') %the green fixation dot on the screen
            FS = cgflip(BG(1), BG(2), BG(3));
            nf=nf+1;
            
            LOG.Trial(Par.Trlcount).StimTarDur = FS - FO; % log time between stim and targ onset
            
            dasbit(Par.TargetB, 1);  % set the target channel in TDT to 1 to allow target onset reconstruction
            dasreset(2); %check target window  enter
            refreshtracker(3) %set fix point to green
            
            Time = 0;
            while Time < RACT && Hit <= 0  %RACT = time to respond (reaction time)
                %Check for 5 ms
                %dasrun(5)
                [Hit Time] = DasCheck;
                if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
            end
            %Hit % don't output this to cmd
        else
            Abort = true;
        end
        %END EVENT 3
    else
        Abort = true;
    end
    
    %END EVENT 2
    
    
    
    %///////// POSTTRIAL AND REWARD //////////////////////////////////////
    if Hit ~= 0 && ~Abort %has entered a target window (false or correct)

        if Par.Mouserun
            HP = line('XData', Par.ZOOM * (LPStat(3) + Par.MOff(1)), 'YData', Par.ZOOM * (LPStat(4) + Par.MOff(2)), 'EraseMode','none');
        else
            HP = line('XData', Par.ZOOM * LPStat(3), 'YData', Par.ZOOM * LPStat(4), 'EraseMode','none');
        end
        set(HP, 'Marker', '+', 'MarkerSize', 20, 'MarkerEdgeColor', 'm')
        
        if Hit == 2 && LPStat(6) < SACCT %correct target within max allowed saccade time >> give juice
            dasbit(  Par.CorrectB, 1); % set the Correct channel in TDT to 1
            dasbit(  Par.RewardB, 1); % set the Reward channel in TDT to 1
            dasjuice(5); % open reward valve
            Par.Corrcount = Par.Corrcount + 1; %log correct trials
            % beep
            TrialStatus='Target';
            
            % find out how much reward should be given and give it
            if STIM.UseSpecRew
                RewTime = STIM.RewardValues(STIM.TrialList(TrialNr,3));
                LOG.TotRew = LOG.TotRew+RewTime;
                pause(RewTime) %RewardTime is in seconds
            else
                pause(Par.RewardTime) %RewardTime is in seconds
                LOG.TotRew = LOG.TotRew+Par.RewardTime;
            end
            dasjuice(0.0); % switch off reward
            dasbit(  Par.RewardB, 0); % set the Reward channel in TDT to 0
            
            % log which target was selected
            LOG.Trial(Par.Trlcount).TarChoice=LOG.Trial(Par.Trlcount).TarPos;
            
        elseif Hit == 1 && LPStat(6) < SACCT
            dasbit(  Par.ErrorB, 1);
            Par.Errcount = Par.Errcount + 1;
            % what kind of error?
            % check x,y endpoints against target windows
            % these are the x and y endpoints of the eye data
            xE=LPStat(3);
            yE=LPStat(4);
            
            %targx is a column of target x positions
            %targy is a column of target y positions
            
            % calculate the distance from the eye-endpoint to all targets
            EyeDistFromTar = sqrt((targx-xE).^2+(targy-yE).^2);
            % find the closest target (should be the one that is selected)
            SelTar=find(EyeDistFromTar==min(EyeDistFromTar),1,'first');
            % this procedure fails if target windows overlap
            % which they shouldn't anyway
            
            % log which target was selected
            LOG.Trial(Par.Trlcount).TarChoice=SelTar;
            
            % determine the status of the chosen target
            if SelTar==STIM.TrialTypes(TrialTypeNo,3)
                % salient distractor selected
                TrialStatus='Distractor';
                Par.Distcount=Par.Distcount+1; 
            else
                %in wrong target window
                TrialStatus='Nontarget';
            end
        elseif Hit ~= 0 && LPStat(6) >= SACCT % too slow
            TrialStatus='SaccadeTooSlow';
        end
        
        %keep following eye motion to plot complete saccade
        for i = 1:10   %keep targoff for 50ms
            %dasrun(5) %not time critical, add some time to follow eyes
            %dasrun 5);
            DasCheck; %keep following eye motion
            if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
        end
        
        % log some behavioral info
        LOG.Trial(Par.Trlcount).ReactTime = LPStat(5);
        LOG.Trial(Par.Trlcount).SaccTime = LPStat(6);
        LOG.Trial(Par.Trlcount).HitPos = [LPStat(3) LPStat(4)];   
        LOG.Trial(Par.Trlcount).Status = TrialStatus;
        LOG.Trial(Par.Trlcount).TotRew = LOG.TotRew;
        
        %output some info to cmd
        % trial nr and status
        fprintf(['Trial ' num2str(Par.Trlcount) ': ' TrialStatus '\n']);
        % reaction time (RT), saccade time(ST), and Total reward (TR) until now
        fprintf(['RT: ' num2str(LPStat(5))  ...
            ' ST: ' num2str(LPStat(6)) ...
            ' TR: ' num2str(LOG.TotRew) '\n\n']); 
    
    elseif Par.Trlcount>0 && ~Abort % trial was not aborted but no target was selected in time
        TrialStatus='NoHit';
        % log some behavioral info
        LOG.Trial(Par.Trlcount).ReactTime = [];
        LOG.Trial(Par.Trlcount).SaccTime = [];
        LOG.Trial(Par.Trlcount).HitPos = [];   
        LOG.Trial(Par.Trlcount).Status = TrialStatus;  
        LOG.Trial(Par.Trlcount).TotRew = LOG.TotRew;
        
        %output some info to cmd
        fprintf(['Trial ' num2str(Par.Trlcount) ': ' TrialStatus '\n']);
        fprintf(['RT: ' num2str(LPStat(5))  ...
            ' ST: ' num2str(LPStat(6)) ...
            ' TR: ' num2str(LOG.TotRew) '\n\n']); 
   
    elseif Par.Trlcount>0 && Abort % trial was started but aborted
        TrialStatus='Aborted';
        % log some behavioral info
        LOG.Trial(Par.Trlcount).ReactTime = [];
        LOG.Trial(Par.Trlcount).SaccTime = [];
        LOG.Trial(Par.Trlcount).HitPos = [];   
        LOG.Trial(Par.Trlcount).Status = TrialStatus;
        LOG.Trial(Par.Trlcount).TotRew = LOG.TotRew;
        
    end
    
    if Hit ~= 2  %error response
        %add pause when subject makes error
        for i = 1:round(ERRT/5)   %keep targoff for Times.Err ms
            %                  pause(0.005)
            %dasrun(5)
            DasCheck;
            if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
        end
        
    end                       %Times.Err is in ms
    [Hit Lasttime] = DasCheck;
    if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
    %///////////////////////INTERTRIAL AND CLEANUP
    
    %reset all bits to null
    for i = [0 1 2 3 4 5 6 7]  %Error, Stim, Saccade, Trial, Correct,
        dasbit(  i, 0);
    end
    dasclearword();
    
    SCNT = {'TRIALS'};
    SCNT(2) = { ['N: ' num2str(Par.Trlcount) ]}; % n trials
    SCNT(3) = { ['C: ' num2str(Par.Corrcount) ] }; % n correct
    SCNT(4) = { ['E: ' num2str(Par.Errcount) ] }; % n error
    SCNT(5) = { ['D: ' num2str(Par.Distcount) ] }; % n distractor
    set(Hnd(1), 'String', SCNT ) %display updated numbers in GUI
    
    SD = dasgetnoise();
    SD = SD./Par.PixPerDeg;
    set(Hnd(2), 'String', SD )
    
    cgpencol(BG(1), BG(2), BG(3)) %clear background before flipping
    cgrect
    cgflip(BG(1), BG(2), BG(3))
    nf=nf+1;
    
    %pause( Times.InterTrial/1000 ) %pause is called with seconds
    %Times.InterTrial is in ms
    Time = Lasttime;
    while Time < ISI + ISI_R*rand(1) + ERRT
        %              pause(0.005)
        %dasrun(5)
        [hit Time] = DasCheck; %#ok<ASGLU>
        if mod(nf,nfr)==0; refreshtracker(1); end %keep eye-position line short
    end
    
end   %WHILE_NOT_ESCAPED%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Save log file ===============================
cd LOG;
% create a folder for this run
warning off;  %#ok<*WNOFF>
mkdir(LOG.FileName);
cd(LOG.FileName);
% the generated parameters in a log-file
save(LOG.FileName,'LOG','Par','STIM','-v7.3');
% a copy of this runstim
fn=[LOG.FileName '_runstim.m'];
cfn=[mfilename('fullpath') '.m'];
copyfile(cfn,fn);
% a copy of the settings file
copyfile(LOG.SettingsFileFull,[LOG.FileName '_settings.m']);
cd ..
cd ..

% backup under unique time name in case you accidentally overwrite
mkdir('REDUNDANT_LOG');
warning on; %#ok<*WNON>
cd 'REDUNDANT_LOG';
save(['DATA_' LOG.datestr '_' LOG.timestr],'LOG','Par','STIM','-v7.3');
copyfile(cfn,['Runstim_' LOG.datestr '_' LOG.timestr '.m']);
copyfile(LOG.SettingsFileFull,['Settings_' LOG.datestr '_' LOG.timestr '.m']);

cd ..