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BiaPy_serial2p_test
Adam Tyson 408b590f01 Add BiaPy serial 2p example 3 months ago
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MS_CX_left_2_subset.zip 408b590f01 Add BiaPy serial 2p example 3 months ago
MS_CX_left_2_subset_cells.csv 408b590f01 Add BiaPy serial 2p example 3 months ago
README.md 408b590f01 Add BiaPy serial 2p example 3 months ago

README.md

BiaPy_serial2p_test

This dataset is a small subset of the MS_CX_left serial section two-photon whole mouse brain image. This is known as Brain 1 in Tyson, Rousseau & Niedworok et al. (2021), and the full dataset is available at in.g-node.org/cellfinder/manuscript_data/src/master/raw_data/brain1.

The full image is two channels and 2550 planes, each 3873x4949. This subset is 20 planes, in an area with sparse cell labelling and relatively few artefacts.

There is also a CSV file containing the coordinates of the centroids of ~100 labelled cells.