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Add BiaPy serial 2p example

Adam Tyson 3 months ago
parent
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408b590f01

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BiaPy_serial2p_test/MS_CX_left_2_subset.zip

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+/annex/objects/MD5-s471145952--477242c7a6182bf92d596cfb78f375a5

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BiaPy_serial2p_test/MS_CX_left_2_subset_cells.csv

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BiaPy_serial2p_test/README.md

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+# BiaPy_serial2p_test
+
+This dataset is a small subset of the MS_CX_left serial section two-photon whole mouse brain image. This is known as `Brain 1` in [Tyson, Rousseau & Niedworok et al. (2021)](https://doi.org/10.1371/journal.pcbi.1009074), and the full dataset is available at [in.g-node.org/cellfinder/manuscript_data/src/master/raw_data/brain1](https://gin.g-node.org/cellfinder/manuscript_data/src/master/raw_data/brain1).
+
+The full image is two channels and 2550 planes, each 3873x4949. This subset is 20 planes, in an area with sparse cell labelling and relatively few artefacts. 
+
+There is also a CSV file containing the coordinates of the centroids of ~100 labelled cells.