We use cookies to ensure you get the best experience on our website
Strona główna Odkrywaj Pomoc News
Zarejestruj się Zaloguj się

Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
/
atlases
6
1
Forkuj 2
Pliki Problemy 0 Oczekujące zmiany 0 Wiki

Brak opisu

Gałąź: master
Gałęzie Tagi
atlases
Adam Tyson 07fe831f37 Fix typo in atlas list 1 dzień temu
LICENSE bbbe2705e7 Initial commit 4 lat temu
README.md 07fe831f37 Fix typo in atlas list 1 dzień temu
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA 2 lat temu
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 miesięcy temu
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA 2 lat temu
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 miesięcy temu
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA 2 lat temu
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 miesięcy temu
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA 2 lat temu
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 miesięcy temu
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA 2 lat temu
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 miesięcy temu
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA 2 lat temu
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 miesięcy temu
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA 2 lat temu
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 miesięcy temu
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA 2 lat temu
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas 3 miesięcy temu
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data 3 lat temu
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas 4 miesięcy temu
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' 4 lat temu
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 6 miesięcy temu
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 lat temu
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 lat temu
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 lat temu
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 lat temu
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 lat temu
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 lat temu
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 lat temu
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 lat temu
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 lat temu
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 lat temu
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 lat temu
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 miesięcy temu
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 miesięcy temu
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA 3 lat temu
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' 2 lat temu
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 6 miesięcy temu
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 lat temu
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 lat temu
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 lat temu
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok temu
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok temu
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok temu
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok temu
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok temu
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas 1 rok temu
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 rok temu
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update 5 miesięcy temu
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case 1 rok temu
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update 5 miesięcy temu
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 lat temu
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 miesięcy temu
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution 4 lat temu
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 miesięcy temu
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas 4 lat temu
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 miesięcy temu
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 lat temu
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 miesięcy temu
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' 4 lat temu
last_versions.conf f97da9b305 Update 'last_versions.conf' 3 tygodni temu
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 lat temu
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 lat temu
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 lat temu
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 lat temu
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 lat temu
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas 2 lat temu
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas 6 miesięcy temu
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 6 miesięcy temu
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas 3 tygodni temu
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas 2 lat temu
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 7 miesięcy temu
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish 5 miesięcy temu
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas 3 miesięcy temu
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas 3 lat temu
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz 1 rok temu
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 2 miesięcy temu

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images Name in API
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT allen_mouse_10um, allen_mouse_25um, allen_mouse_100um
Allen Human Brain Atlas 500 micron Adult MRI allen_human_500um
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH mpin_zfish_1um
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT kim_mouse_10um, kim_mouse_25um, kim_mouse_50um, kim_mouse_100um
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT osten_mouse_10um, osten_mouse_25um, osten_mouse_50um, osten_mouse_100um
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM perens_lsfm_mouse_20um
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl allen_cord_20um
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM azba_zfish_4um
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI whs_sd_rat_39um
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl admba_3d_e11_5_mouse_16um, admba_3d_e13_5_mouse_16um, admba_3d_e15_5_mouse_16um, admba_3d_e18_5_mouse_16um, admba_3d_p14_mouse_16.752um, admba_3d_p28_mouse_16.752um, admba_3d_p4_mouse_16.752um, admba_3d_p56_mouse_25um
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM princeton_mouse_20um
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2) kim_dev_mouse_stp_10um, kim_dev_mouse_idisco_10um, kim_dev_mouse_mri_a0_10um, kim_dev_mouse_mri_adc_10um, kim_dev_mouse_mri_dwi_10um, kim_dev_mouse_mri_fa_10um, kim_dev_mouse_mri_mtr_10um, kim_dev_mouse_mri_t2_10um
Blind Mexican Cavefish Brain Atlas 2 micron 6 days post fertilisation IHC sju_cavefish_2um
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT allen_mouse_bluebrain_barrels_10um, allen_mouse_bluebrain_barrels_25um
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI unam_axolotl_40um
Prairie Vole Brain Atlas 25 micron Unknown LSFM prairie_vole_25um