We use cookies to ensure you get the best experience on our website
Startseite Erkunden Hilfe News
Registrieren Anmelden

Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
/
atlases
6
1
Fork 2
Dateien Issues 0 Pull-Requests 0 Wiki

Keine Beschreibung

Branch: master
Branches Tags
atlases
Adam Tyson 07fe831f37 Fix typo in atlas list vor 1 Tag
LICENSE bbbe2705e7 Initial commit vor 4 Jahren
README.md 07fe831f37 Fix typo in atlas list vor 1 Tag
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA vor 2 Jahren
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) vor 3 Monaten
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA vor 2 Jahren
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) vor 3 Monaten
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA vor 2 Jahren
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) vor 3 Monaten
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA vor 2 Jahren
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) vor 3 Monaten
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA vor 2 Jahren
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) vor 3 Monaten
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA vor 2 Jahren
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) vor 3 Monaten
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA vor 2 Jahren
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) vor 3 Monaten
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA vor 2 Jahren
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas vor 3 Monaten
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data vor 3 Jahren
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas vor 4 Monaten
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' vor 4 Jahren
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 vor 6 Monaten
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, vor 4 Jahren
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, vor 4 Jahren
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, vor 4 Jahren
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases vor 4 Jahren
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, vor 4 Jahren
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, vor 4 Jahren
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases vor 4 Jahren
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, vor 4 Jahren
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, vor 4 Jahren
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases vor 4 Jahren
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, vor 4 Jahren
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases vor 3 Monaten
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases vor 3 Monaten
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA vor 3 Jahren
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' vor 2 Jahren
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 vor 6 Monaten
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, vor 4 Jahren
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, vor 4 Jahren
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, vor 4 Jahren
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) vor 1 Jahr
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) vor 1 Jahr
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) vor 1 Jahr
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) vor 1 Jahr
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) vor 1 Jahr
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas vor 1 Jahr
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) vor 1 Jahr
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update vor 5 Monaten
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case vor 1 Jahr
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update vor 5 Monaten
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions vor 4 Jahren
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases vor 6 Monaten
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution vor 4 Jahren
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases vor 6 Monaten
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas vor 4 Jahren
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases vor 6 Monaten
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions vor 4 Jahren
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases vor 6 Monaten
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' vor 4 Jahren
last_versions.conf f97da9b305 Update 'last_versions.conf' vor 3 Wochen
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, vor 4 Jahren
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases vor 3 Jahren
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases vor 3 Jahren
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases vor 3 Jahren
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases vor 3 Jahren
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas vor 2 Jahren
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas vor 6 Monaten
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 vor 6 Monaten
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas vor 3 Wochen
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas vor 2 Jahren
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 vor 7 Monaten
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish vor 5 Monaten
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas vor 3 Monaten
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas vor 3 Jahren
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz vor 1 Jahr
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 vor 2 Monaten

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images Name in API
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT allen_mouse_10um, allen_mouse_25um, allen_mouse_100um
Allen Human Brain Atlas 500 micron Adult MRI allen_human_500um
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH mpin_zfish_1um
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT kim_mouse_10um, kim_mouse_25um, kim_mouse_50um, kim_mouse_100um
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT osten_mouse_10um, osten_mouse_25um, osten_mouse_50um, osten_mouse_100um
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM perens_lsfm_mouse_20um
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl allen_cord_20um
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM azba_zfish_4um
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI whs_sd_rat_39um
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl admba_3d_e11_5_mouse_16um, admba_3d_e13_5_mouse_16um, admba_3d_e15_5_mouse_16um, admba_3d_e18_5_mouse_16um, admba_3d_p14_mouse_16.752um, admba_3d_p28_mouse_16.752um, admba_3d_p4_mouse_16.752um, admba_3d_p56_mouse_25um
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM princeton_mouse_20um
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2) kim_dev_mouse_stp_10um, kim_dev_mouse_idisco_10um, kim_dev_mouse_mri_a0_10um, kim_dev_mouse_mri_adc_10um, kim_dev_mouse_mri_dwi_10um, kim_dev_mouse_mri_fa_10um, kim_dev_mouse_mri_mtr_10um, kim_dev_mouse_mri_t2_10um
Blind Mexican Cavefish Brain Atlas 2 micron 6 days post fertilisation IHC sju_cavefish_2um
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT allen_mouse_bluebrain_barrels_10um, allen_mouse_bluebrain_barrels_25um
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI unam_axolotl_40um
Prairie Vole Brain Atlas 25 micron Unknown LSFM prairie_vole_25um