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On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

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process.log

process.log 21 KB
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  1. DSI Studio "Chen" Apr 14 2022
    2. 

  2. source=sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.gz
    3. 

  3. action=src
    4. 

  4. reading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.gz
    5. 

  5. b_table=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt
    6. 

  6. b-table /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt loaded
    7. 

  7. output=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
    8. 

  8. output src to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
    9. 

  9. sort_b_table=0
    10. 

  10. up_sampling=0
    11. 

  11. save sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
    12. 

  12. DSI Studio "Chen" Apr 14 2022
    13. 

  13. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
    14. 

  14. action=rec
    15. 

  15. loading source...
    16. 

  16. SRC file loaded
    17. 

  17. src loaded
    18. 

  18. mask=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetMask_scaled.nii
    19. 

  19. cmd=[Step T2][B-table][flip by]+[Step T2][B-table][flip bz]
    20. 

  20. [Step T2][B-table][flip by]
    21. 

  21. [Step T2][B-table][flip bz]
    22. 

  22. param0=1.25
    23. 

  23. method=1
    24. 

  24. template=1
    25. 

  25. odf_order=8
    26. 

  26. odf_resolving=0
    27. 

  27. record_odf=0
    28. 

  28. dti_no_high_b=0
    29. 

  29. check_btable=0
    30. 

  30. other_output=fa,ad,rd,md,nqa,iso,rdi,nrdi
    31. 

  31. num_fiber=5
    32. 

  32. r2_weighted=0
    33. 

  33. thread_count=8
    34. 

  34. half_sphere=1
    35. 

  35. scheme_balance=1
    36. 

  36. start reconstruction...
    37. 

  37. DTI
    38. 

  38. saving sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    39. 

  39. reconstruction finished.
    40. 

  40. DSI Studio "Chen" Apr 14 2022
    41. 

  41. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    42. 

  42. action=exp
    43. 

  43. export=fa
    44. 

  44. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    45. 

  45. FIB file loaded
    46. 

  46. fa.nii.gz saved 
    47. 

  47. DSI Studio "Chen" Apr 14 2022
    48. 

  48. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    49. 

  49. action=exp
    50. 

  50. export=md
    51. 

  51. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    52. 

  52. FIB file loaded
    53. 

  53. md loaded
    54. 

  54. md.nii.gz saved 
    55. 

  55. DSI Studio "Chen" Apr 14 2022
    56. 

  56. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    57. 

  57. action=exp
    58. 

  58. export=ad
    59. 

  59. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    60. 

  60. FIB file loaded
    61. 

  61. ad loaded
    62. 

  62. ad.nii.gz saved 
    63. 

  63. DSI Studio "Chen" Apr 14 2022
    64. 

  64. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    65. 

  65. action=exp
    66. 

  66. export=rd
    67. 

  67. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    68. 

  68. FIB file loaded
    69. 

  69. rd loaded
    70. 

  70. rd.nii.gz saved 
    71. 

  71. DSI Studio "Chen" Apr 14 2022
    72. 

  72. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    73. 

  73. action=trk
    74. 

  74. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    75. 

  75. FIB file loaded
    76. 

  76. otsu_threshold=0.6
    77. 

  77. fa_threshold=.02
    78. 

  78. dt_threshold=0.2
    79. 

  79. turning_angle=55
    80. 

  80. step_size=.5
    81. 

  81. smoothing=.1
    82. 

  82. min_length=.5
    83. 

  83. max_length=12.0
    84. 

  84. method=0
    85. 

  85. initial_dir=0
    86. 

  86. check_ending=0
    87. 

  87. tip_iteration=0
    88. 

  88. fiber_count=1000000
    89. 

  89. seed_count=0
    90. 

  90. thread_count=8
    91. 

  91. start tracking.
    92. 

  92. thread_count=8
    93. 

  93. finished tracking.
    94. 

  94. 1000000 tracts are generated using 1034023 seeds.
    95. 

  95. 0 tracts are removed by pruning.
    96. 

  96. The final analysis results in 1000000 tracts.
    97. 

  97. output=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    98. 

  98. saving sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    99. 

  99. Warning: --interpolation is not used. Please check command line syntax.
    100. 

  100. DSI Studio "Chen" Apr 14 2022
    101. 

  101. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    102. 

  102. action=ana
    103. 

  103. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    104. 

  104. FIB file loaded
    105. 

  105. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    106. 

  106. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    107. 

  107. A total of 1000000 tracks loaded
    108. 

  108. a total of 1 tract file(s) loaded
    109. 

  109. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
    110. 

  110. connectivity_type=pass,end
    111. 

  111. connectivity_value=qa
    112. 

  112. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
    113. 

  113. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii as a NIFTI regioin file
    114. 

  114. DWI dimension=(128,128,20)
    115. 

  115. NIFTI dimension=(128,128,20)
    116. 

  116. nifti loaded as multiple ROI file
    117. 

  117. looking for region label file
    118. 

  118. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.txt
    119. 

  119. a total of 14 regions are loaded.
    120. 

  120. connectivity_threshold=0.001
    121. 

  121. count tracks by passing
    122. 

  122. calculate matrix using qa
    123. 

  123. connectivity calculation error:Cannot quantify matrix value using qa
    124. 

  124. DSI Studio "Chen" Apr 14 2022
    125. 

  125. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    126. 

  126. action=ana
    127. 

  127. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    128. 

  128. FIB file loaded
    129. 

  129. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    130. 

  130. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    131. 

  131. A total of 1000000 tracks loaded
    132. 

  132. a total of 1 tract file(s) loaded
    133. 

  133. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
    134. 

  134. connectivity_type=pass,end
    135. 

  135. connectivity_value=count
    136. 

  136. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
    137. 

  137. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii as a NIFTI regioin file
    138. 

  138. DWI dimension=(128,128,20)
    139. 

  139. NIFTI dimension=(128,128,20)
    140. 

  140. nifti loaded as multiple ROI file
    141. 

  141. looking for region label file
    142. 

  142. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.txt
    143. 

  143. a total of 14 regions are loaded.
    144. 

  144. connectivity_threshold=0.001
    145. 

  145. count tracks by passing
    146. 

  146. calculate matrix using count
    147. 

  147. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.connectivity.mat
    148. 

  148. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.connectogram.txt
    149. 

  149. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.network_measures.txt
    150. 

  150. count tracks by ending
    151. 

  151. calculate matrix using count
    152. 

  152. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.connectivity.mat
    153. 

  153. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.connectogram.txt
    154. 

  154. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.network_measures.txt
    155. 

  155. DSI Studio "Chen" Apr 14 2022
    156. 

  156. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    157. 

  157. action=ana
    158. 

  158. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    159. 

  159. FIB file loaded
    160. 

  160. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    161. 

  161. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    162. 

  162. A total of 1000000 tracks loaded
    163. 

  163. a total of 1 tract file(s) loaded
    164. 

  164. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
    165. 

  165. connectivity_type=pass,end
    166. 

  166. connectivity_value=qa
    167. 

  167. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
    168. 

  168. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii as a NIFTI regioin file
    169. 

  169. DWI dimension=(128,128,20)
    170. 

  170. NIFTI dimension=(128,128,20)
    171. 

  171. nifti loaded as multiple ROI file
    172. 

  172. looking for region label file
    173. 

  173. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.txt
    174. 

  174. a total of 14 regions are loaded.
    175. 

  175. connectivity_threshold=0.001
    176. 

  176. count tracks by passing
    177. 

  177. calculate matrix using qa
    178. 

  178. connectivity calculation error:Cannot quantify matrix value using qa
    179. 

  179. DSI Studio "Chen" Apr 14 2022
    180. 

  180. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    181. 

  181. action=ana
    182. 

  182. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    183. 

  183. FIB file loaded
    184. 

  184. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    185. 

  185. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    186. 

  186. A total of 1000000 tracks loaded
    187. 

  187. a total of 1 tract file(s) loaded
    188. 

  188. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
    189. 

  189. connectivity_type=pass,end
    190. 

  190. connectivity_value=count
    191. 

  191. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
    192. 

  192. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii as a NIFTI regioin file
    193. 

  193. DWI dimension=(128,128,20)
    194. 

  194. NIFTI dimension=(128,128,20)
    195. 

  195. nifti loaded as multiple ROI file
    196. 

  196. looking for region label file
    197. 

  197. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.txt
    198. 

  198. a total of 14 regions are loaded.
    199. 

  199. connectivity_threshold=0.001
    200. 

  200. count tracks by passing
    201. 

  201. calculate matrix using count
    202. 

  202. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.connectivity.mat
    203. 

  203. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.connectogram.txt
    204. 

  204. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.network_measures.txt
    205. 

  205. count tracks by ending
    206. 

  206. calculate matrix using count
    207. 

  207. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.connectivity.mat
    208. 

  208. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.connectogram.txt
    209. 

  209. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.network_measures.txt
    210. 

  210. DSI Studio "Chen" Apr 14 2022
    211. 

  211. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    212. 

  212. action=ana
    213. 

  213. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    214. 

  214. FIB file loaded
    215. 

  215. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    216. 

  216. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    217. 

  217. A total of 1000000 tracks loaded
    218. 

  218. a total of 1 tract file(s) loaded
    219. 

  219. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
    220. 

  220. connectivity_type=pass,end
    221. 

  221. connectivity_value=qa
    222. 

  222. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
    223. 

  223. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii as a NIFTI regioin file
    224. 

  224. DWI dimension=(128,128,20)
    225. 

  225. NIFTI dimension=(128,128,20)
    226. 

  226. nifti loaded as multiple ROI file
    227. 

  227. looking for region label file
    228. 

  228. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.txt
    229. 

  229. a total of 901 regions are loaded.
    230. 

  230. connectivity_threshold=0.001
    231. 

  231. count tracks by passing
    232. 

  232. calculate matrix using qa
    233. 

  233. connectivity calculation error:Cannot quantify matrix value using qa
    234. 

  234. DSI Studio "Chen" Apr 14 2022
    235. 

  235. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    236. 

  236. action=ana
    237. 

  237. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    238. 

  238. FIB file loaded
    239. 

  239. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    240. 

  240. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    241. 

  241. A total of 1000000 tracks loaded
    242. 

  242. a total of 1 tract file(s) loaded
    243. 

  243. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
    244. 

  244. connectivity_type=pass,end
    245. 

  245. connectivity_value=count
    246. 

  246. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
    247. 

  247. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii as a NIFTI regioin file
    248. 

  248. DWI dimension=(128,128,20)
    249. 

  249. NIFTI dimension=(128,128,20)
    250. 

  250. nifti loaded as multiple ROI file
    251. 

  251. looking for region label file
    252. 

  252. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.txt
    253. 

  253. a total of 901 regions are loaded.
    254. 

  254. connectivity_threshold=0.001
    255. 

  255. count tracks by passing
    256. 

  256. calculate matrix using count
    257. 

  257. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.connectivity.mat
    258. 

  258. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.connectogram.txt
    259. 

  259. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.network_measures.txt
    260. 

  260. count tracks by ending
    261. 

  261. calculate matrix using count
    262. 

  262. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.connectivity.mat
    263. 

  263. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.connectogram.txt
    264. 

  264. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.network_measures.txt
    265. 

  265. DSI Studio "Chen" Apr 14 2022
    266. 

  266. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    267. 

  267. action=ana
    268. 

  268. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    269. 

  269. FIB file loaded
    270. 

  270. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    271. 

  271. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    272. 

  272. A total of 1000000 tracks loaded
    273. 

  273. a total of 1 tract file(s) loaded
    274. 

  274. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
    275. 

  275. connectivity_type=pass,end
    276. 

  276. connectivity_value=qa
    277. 

  277. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
    278. 

  278. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii as a NIFTI regioin file
    279. 

  279. DWI dimension=(128,128,20)
    280. 

  280. NIFTI dimension=(128,128,20)
    281. 

  281. nifti loaded as multiple ROI file
    282. 

  282. looking for region label file
    283. 

  283. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.txt
    284. 

  284. a total of 93 regions are loaded.
    285. 

  285. connectivity_threshold=0.001
    286. 

  286. count tracks by passing
    287. 

  287. calculate matrix using qa
    288. 

  288. connectivity calculation error:Cannot quantify matrix value using qa
    289. 

  289. DSI Studio "Chen" Apr 14 2022
    290. 

  290. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
    291. 

  291. action=ana
    292. 

  292. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
    293. 

  293. FIB file loaded
    294. 

  294. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    295. 

  295. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
    296. 

  296. A total of 1000000 tracks loaded
    297. 

  297. a total of 1 tract file(s) loaded
    298. 

  298. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
    299. 

  299. connectivity_type=pass,end
    300. 

  300. connectivity_value=count
    301. 

  301. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
    302. 

  302. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii as a NIFTI regioin file
    303. 

  303. DWI dimension=(128,128,20)
    304. 

  304. NIFTI dimension=(128,128,20)
    305. 

  305. nifti loaded as multiple ROI file
    306. 

  306. looking for region label file
    307. 

  307. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.txt
    308. 

  308. a total of 93 regions are loaded.
    309. 

  309. connectivity_threshold=0.001
    310. 

  310. count tracks by passing
    311. 

  311. calculate matrix using count
    312. 

  312. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.connectivity.mat
    313. 

  313. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.connectogram.txt
    314. 

  314. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.network_measures.txt
    315. 

  315. count tracks by ending
    316. 

  316. calculate matrix using count
    317. 

  317. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.connectivity.mat
    318. 

  318. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.connectogram.txt
    319. 

  319. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.network_measures.txt
    320. 

  320. Both bval and bvec files must be present in the folder.
    321. 

  321. Merged table saved to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt
    322.