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- DSI Studio "Chen" Apr 14 2022
- source=sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.gz
- action=src
- reading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.gz
- b_table=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt
- b-table /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt loaded
- output=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
- output src to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
- sort_b_table=0
- up_sampling=0
- save sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
- action=rec
- loading source...
- SRC file loaded
- src loaded
- mask=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetMask_scaled.nii
- cmd=[Step T2][B-table][flip by]+[Step T2][B-table][flip bz]
- [Step T2][B-table][flip by]
- [Step T2][B-table][flip bz]
- param0=1.25
- method=1
- template=1
- odf_order=8
- odf_resolving=0
- record_odf=0
- dti_no_high_b=0
- check_btable=0
- other_output=fa,ad,rd,md,nqa,iso,rdi,nrdi
- num_fiber=5
- r2_weighted=0
- thread_count=8
- half_sphere=1
- scheme_balance=1
- start reconstruction...
- DTI
- saving sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- reconstruction finished.
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=exp
- export=fa
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- fa.nii.gz saved
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=exp
- export=md
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- md loaded
- md.nii.gz saved
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=exp
- export=ad
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- ad loaded
- ad.nii.gz saved
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=exp
- export=rd
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- rd loaded
- rd.nii.gz saved
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=trk
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- otsu_threshold=0.6
- fa_threshold=.02
- dt_threshold=0.2
- turning_angle=55
- step_size=.5
- smoothing=.1
- min_length=.5
- max_length=12.0
- method=0
- initial_dir=0
- check_ending=0
- tip_iteration=0
- fiber_count=1000000
- seed_count=0
- thread_count=8
- start tracking.
- thread_count=8
- finished tracking.
- 1000000 tracts are generated using 1034023 seeds.
- 0 tracts are removed by pruning.
- The final analysis results in 1000000 tracts.
- output=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- saving sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- Warning: --interpolation is not used. Please check command line syntax.
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
- connectivity_type=pass,end
- connectivity_value=qa
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.txt
- a total of 14 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using qa
- connectivity calculation error:Cannot quantify matrix value using qa
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
- connectivity_type=pass,end
- connectivity_value=count
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.txt
- a total of 14 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.network_measures.txt
- count tracks by ending
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.network_measures.txt
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
- connectivity_type=pass,end
- connectivity_value=qa
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.txt
- a total of 14 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using qa
- connectivity calculation error:Cannot quantify matrix value using qa
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
- connectivity_type=pass,end
- connectivity_value=count
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.txt
- a total of 14 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.network_measures.txt
- count tracks by ending
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.network_measures.txt
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
- connectivity_type=pass,end
- connectivity_value=qa
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.txt
- a total of 901 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using qa
- connectivity calculation error:Cannot quantify matrix value using qa
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
- connectivity_type=pass,end
- connectivity_value=count
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.txt
- a total of 901 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.network_measures.txt
- count tracks by ending
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.network_measures.txt
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
- connectivity_type=pass,end
- connectivity_value=qa
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.txt
- a total of 93 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using qa
- connectivity calculation error:Cannot quantify matrix value using qa
- DSI Studio "Chen" Apr 14 2022
- source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
- action=ana
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
- FIB file loaded
- tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
- A total of 1000000 tracks loaded
- a total of 1 tract file(s) loaded
- connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
- connectivity_type=pass,end
- connectivity_value=count
- loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
- reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii as a NIFTI regioin file
- DWI dimension=(128,128,20)
- NIFTI dimension=(128,128,20)
- nifti loaded as multiple ROI file
- looking for region label file
- label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.txt
- a total of 93 regions are loaded.
- connectivity_threshold=0.001
- count tracks by passing
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.network_measures.txt
- count tracks by ending
- calculate matrix using count
- export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.connectivity.mat
- export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.connectogram.txt
- export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.network_measures.txt
- Both bval and bvec files must be present in the folder.
- Merged table saved to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt
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