process.log 21 KB

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  1. DSI Studio "Chen" Apr 14 2022
  2. source=sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.gz
  3. action=src
  4. reading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.gz
  5. b_table=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt
  6. b-table /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt loaded
  7. output=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
  8. output src to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
  9. sort_b_table=0
  10. up_sampling=0
  11. save sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
  12. DSI Studio "Chen" Apr 14 2022
  13. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/src/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz
  14. action=rec
  15. loading source...
  16. SRC file loaded
  17. src loaded
  18. mask=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetMask_scaled.nii
  19. cmd=[Step T2][B-table][flip by]+[Step T2][B-table][flip bz]
  20. [Step T2][B-table][flip by]
  21. [Step T2][B-table][flip bz]
  22. param0=1.25
  23. method=1
  24. template=1
  25. odf_order=8
  26. odf_resolving=0
  27. record_odf=0
  28. dti_no_high_b=0
  29. check_btable=0
  30. other_output=fa,ad,rd,md,nqa,iso,rdi,nrdi
  31. num_fiber=5
  32. r2_weighted=0
  33. thread_count=8
  34. half_sphere=1
  35. scheme_balance=1
  36. start reconstruction...
  37. DTI
  38. saving sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  39. reconstruction finished.
  40. DSI Studio "Chen" Apr 14 2022
  41. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  42. action=exp
  43. export=fa
  44. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  45. FIB file loaded
  46. fa.nii.gz saved
  47. DSI Studio "Chen" Apr 14 2022
  48. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  49. action=exp
  50. export=md
  51. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  52. FIB file loaded
  53. md loaded
  54. md.nii.gz saved
  55. DSI Studio "Chen" Apr 14 2022
  56. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  57. action=exp
  58. export=ad
  59. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  60. FIB file loaded
  61. ad loaded
  62. ad.nii.gz saved
  63. DSI Studio "Chen" Apr 14 2022
  64. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  65. action=exp
  66. export=rd
  67. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  68. FIB file loaded
  69. rd loaded
  70. rd.nii.gz saved
  71. DSI Studio "Chen" Apr 14 2022
  72. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  73. action=trk
  74. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  75. FIB file loaded
  76. otsu_threshold=0.6
  77. fa_threshold=.02
  78. dt_threshold=0.2
  79. turning_angle=55
  80. step_size=.5
  81. smoothing=.1
  82. min_length=.5
  83. max_length=12.0
  84. method=0
  85. initial_dir=0
  86. check_ending=0
  87. tip_iteration=0
  88. fiber_count=1000000
  89. seed_count=0
  90. thread_count=8
  91. start tracking.
  92. thread_count=8
  93. finished tracking.
  94. 1000000 tracts are generated using 1034023 seeds.
  95. 0 tracts are removed by pruning.
  96. The final analysis results in 1000000 tracts.
  97. output=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  98. saving sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  99. Warning: --interpolation is not used. Please check command line syntax.
  100. DSI Studio "Chen" Apr 14 2022
  101. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  102. action=ana
  103. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  104. FIB file loaded
  105. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  106. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  107. A total of 1000000 tracks loaded
  108. a total of 1 tract file(s) loaded
  109. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
  110. connectivity_type=pass,end
  111. connectivity_value=qa
  112. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
  113. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii as a NIFTI regioin file
  114. DWI dimension=(128,128,20)
  115. NIFTI dimension=(128,128,20)
  116. nifti loaded as multiple ROI file
  117. looking for region label file
  118. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.txt
  119. a total of 14 regions are loaded.
  120. connectivity_threshold=0.001
  121. count tracks by passing
  122. calculate matrix using qa
  123. connectivity calculation error:Cannot quantify matrix value using qa
  124. DSI Studio "Chen" Apr 14 2022
  125. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  126. action=ana
  127. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  128. FIB file loaded
  129. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  130. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  131. A total of 1000000 tracks loaded
  132. a total of 1 tract file(s) loaded
  133. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
  134. connectivity_type=pass,end
  135. connectivity_value=count
  136. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii
  137. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.nii as a NIFTI regioin file
  138. DWI dimension=(128,128,20)
  139. NIFTI dimension=(128,128,20)
  140. nifti loaded as multiple ROI file
  141. looking for region label file
  142. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.txt
  143. a total of 14 regions are loaded.
  144. connectivity_threshold=0.001
  145. count tracks by passing
  146. calculate matrix using count
  147. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.connectivity.mat
  148. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.connectogram.txt
  149. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.pass.network_measures.txt
  150. count tracks by ending
  151. calculate matrix using count
  152. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.connectivity.mat
  153. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.connectogram.txt
  154. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetStrokeMask_scaled.count.end.network_measures.txt
  155. DSI Studio "Chen" Apr 14 2022
  156. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  157. action=ana
  158. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  159. FIB file loaded
  160. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  161. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  162. A total of 1000000 tracks loaded
  163. a total of 1 tract file(s) loaded
  164. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
  165. connectivity_type=pass,end
  166. connectivity_value=qa
  167. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
  168. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii as a NIFTI regioin file
  169. DWI dimension=(128,128,20)
  170. NIFTI dimension=(128,128,20)
  171. nifti loaded as multiple ROI file
  172. looking for region label file
  173. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.txt
  174. a total of 14 regions are loaded.
  175. connectivity_threshold=0.001
  176. count tracks by passing
  177. calculate matrix using qa
  178. connectivity calculation error:Cannot quantify matrix value using qa
  179. DSI Studio "Chen" Apr 14 2022
  180. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  181. action=ana
  182. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  183. FIB file loaded
  184. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  185. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  186. A total of 1000000 tracks loaded
  187. a total of 1 tract file(s) loaded
  188. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
  189. connectivity_type=pass,end
  190. connectivity_value=count
  191. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii
  192. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.nii as a NIFTI regioin file
  193. DWI dimension=(128,128,20)
  194. NIFTI dimension=(128,128,20)
  195. nifti loaded as multiple ROI file
  196. looking for region label file
  197. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.txt
  198. a total of 14 regions are loaded.
  199. connectivity_threshold=0.001
  200. count tracks by passing
  201. calculate matrix using count
  202. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.connectivity.mat
  203. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.connectogram.txt
  204. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.pass.network_measures.txt
  205. count tracks by ending
  206. calculate matrix using count
  207. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.connectivity.mat
  208. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.connectogram.txt
  209. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetparental_Mask_scaled.count.end.network_measures.txt
  210. DSI Studio "Chen" Apr 14 2022
  211. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  212. action=ana
  213. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  214. FIB file loaded
  215. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  216. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  217. A total of 1000000 tracks loaded
  218. a total of 1 tract file(s) loaded
  219. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
  220. connectivity_type=pass,end
  221. connectivity_value=qa
  222. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
  223. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii as a NIFTI regioin file
  224. DWI dimension=(128,128,20)
  225. NIFTI dimension=(128,128,20)
  226. nifti loaded as multiple ROI file
  227. looking for region label file
  228. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.txt
  229. a total of 901 regions are loaded.
  230. connectivity_threshold=0.001
  231. count tracks by passing
  232. calculate matrix using qa
  233. connectivity calculation error:Cannot quantify matrix value using qa
  234. DSI Studio "Chen" Apr 14 2022
  235. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  236. action=ana
  237. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  238. FIB file loaded
  239. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  240. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  241. A total of 1000000 tracks loaded
  242. a total of 1 tract file(s) loaded
  243. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
  244. connectivity_type=pass,end
  245. connectivity_value=count
  246. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii
  247. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.nii as a NIFTI regioin file
  248. DWI dimension=(128,128,20)
  249. NIFTI dimension=(128,128,20)
  250. nifti loaded as multiple ROI file
  251. looking for region label file
  252. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.txt
  253. a total of 901 regions are loaded.
  254. connectivity_threshold=0.001
  255. count tracks by passing
  256. calculate matrix using count
  257. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.connectivity.mat
  258. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.connectogram.txt
  259. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.pass.network_measures.txt
  260. count tracks by ending
  261. calculate matrix using count
  262. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.connectivity.mat
  263. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.connectogram.txt
  264. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnno_scaled.count.end.network_measures.txt
  265. DSI Studio "Chen" Apr 14 2022
  266. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  267. action=ana
  268. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  269. FIB file loaded
  270. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  271. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  272. A total of 1000000 tracks loaded
  273. a total of 1 tract file(s) loaded
  274. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
  275. connectivity_type=pass,end
  276. connectivity_value=qa
  277. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
  278. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii as a NIFTI regioin file
  279. DWI dimension=(128,128,20)
  280. NIFTI dimension=(128,128,20)
  281. nifti loaded as multiple ROI file
  282. looking for region label file
  283. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.txt
  284. a total of 93 regions are loaded.
  285. connectivity_threshold=0.001
  286. count tracks by passing
  287. calculate matrix using qa
  288. connectivity calculation error:Cannot quantify matrix value using qa
  289. DSI Studio "Chen" Apr 14 2022
  290. source=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz
  291. action=ana
  292. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz...
  293. FIB file loaded
  294. tract=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  295. loading sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz
  296. A total of 1000000 tracks loaded
  297. a total of 1 tract file(s) loaded
  298. connectivity=/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
  299. connectivity_type=pass,end
  300. connectivity_value=count
  301. loading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii
  302. reading /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.nii as a NIFTI regioin file
  303. DWI dimension=(128,128,20)
  304. NIFTI dimension=(128,128,20)
  305. nifti loaded as multiple ROI file
  306. looking for region label file
  307. label file loaded:/data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/DSI_studio/sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.txt
  308. a total of 93 regions are loaded.
  309. connectivity_threshold=0.001
  310. count tracks by passing
  311. calculate matrix using count
  312. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.connectivity.mat
  313. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.connectogram.txt
  314. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.pass.network_measures.txt
  315. count tracks by ending
  316. calculate matrix using count
  317. export connectivity matrix to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.connectivity.mat
  318. export connectogram to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.connectogram.txt
  319. export network measures to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/fib_map/sub-SPsV1c2m1_ses-P5_dwi_mcf.nii.src.gz.dti.fib.gz.trk.gz.sub-SPsV1c2m1_ses-P5_dwiDNSmoothMicoBetAnnoSplit_parental_scaled.count.end.network_measures.txt
  320. Both bval and bvec files must be present in the folder.
  321. Merged table saved to /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/dwi/sub-SPsV1c2m1_ses-P5_dwi_btable.txt