testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/registration.log

Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] floating image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [16 16 12]
[reg_aladin_sym] Backward Block number = [15 10 17]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.03568	-0.00934521	0.0205159	-8.57843
0.0120062	1.14376	-0.0141325	-12.8529
0.0138954	-0.00327939	0.980826	-4.34685
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.965724	0.00783293	-0.0200871	8.29775
-0.0103067	0.874259	0.0128126	11.2041
-0.0137159	0.00281212	1.01988	4.35174
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] floating image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [32 32 12]
[reg_aladin_sym] Backward Block number = [29 20 33]
[reg_aladin_sym] Initial forward transformation matrix::
1.03568	-0.00934521	0.0205159	-8.57843
0.0120062	1.14376	-0.0141325	-12.8529
0.0138954	-0.00327939	0.980826	-4.34685
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.965724	0.00783293	-0.0200871	8.29775
-0.0103067	0.874259	0.0128126	11.2041
-0.0137159	0.00281212	1.01988	4.35174
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.04089	-0.0129004	0.0125845	-8.53914
0.00520469	1.13963	-0.0176788	-12.7346
-0.00428085	-0.00564631	0.991379	-4.20659
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.960617	0.0108145	-0.0120012	8.29008
-0.00432318	0.877508	0.015703	11.2039
0.00412339	0.00504446	1.00873	4.34278
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] floating image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [64 64 12]
[reg_aladin_sym] Backward Block number = [57 40 66]
[reg_aladin_sym] Initial forward transformation matrix::
1.04089	-0.0129004	0.0125845	-8.53914
0.00520469	1.13963	-0.0176788	-12.7346
-0.00428085	-0.00564631	0.991379	-4.20659
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.960617	0.0108145	-0.0120012	8.29008
-0.00432318	0.877508	0.015703	11.2039
0.00412339	0.00504446	1.00873	4.34278
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.04039	-0.00699494	0.0163233	-8.61158
0.00469333	1.14758	-0.0192663	-12.8127
0.00569423	0.00799201	0.978553	-4.30619
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.961238	0.00596996	-0.015917	8.28572
-0.00402459	0.871255	0.0172209	11.2026
-0.0055606	-0.00715043	1.02187	4.26086
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 28 sec
Have a good day !

Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] floating image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [15 10 17]
[reg_aladin_sym] Backward Block number = [16 16 12]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.980136	-0.0110158	-0.0131321	8.2252
0.00481809	0.930529	-0.00379668	11.4309
-0.0159363	0.0511952	1.03633	4.44345
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.02042	0.0113662	0.0129722	-8.58074
-0.00521846	1.07438	0.00386998	-12.2554
0.0159496	-0.0529005	0.964956	-3.81422
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] floating image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [29 20 33]
[reg_aladin_sym] Backward Block number = [32 32 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.980136	-0.0110158	-0.0131321	8.2252
0.00481809	0.930529	-0.00379668	11.4309
-0.0159363	0.0511952	1.03633	4.44345
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.02042	0.0113662	0.0129722	-8.58074
-0.00521846	1.07438	0.00386998	-12.2554
0.0159496	-0.0529005	0.964956	-3.81422
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.980247	0.00748211	-0.0194967	8.27711
-0.00743598	0.901599	0.0119601	11.3091
-0.0072428	0.0319719	1.00959	4.39554
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.02023	-0.00916909	0.0198108	-8.42792
0.00832078	1.10953	-0.0129834	-12.5596
0.00705563	-0.0352028	0.991057	-4.01652
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] floating image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [57 40 66]
[reg_aladin_sym] Backward Block number = [64 64 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.980247	0.00748211	-0.0194967	8.27711
-0.00743598	0.901599	0.0119601	11.3091
-0.0072428	0.0319719	1.00959	4.39554
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.02023	-0.00916909	0.0198108	-8.42792
0.00832078	1.10953	-0.0129834	-12.5596
0.00705563	-0.0352028	0.991057	-4.01652
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.979575	0.00858056	-0.0111535	8.27977
-0.00897752	0.900527	0.0214051	11.2954
-0.0115081	0.0184412	1.01088	4.35379
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.02089	-0.00996245	0.011475	-8.3902
0.00990553	1.11085	-0.0234126	-12.5275
0.0114414	-0.0203783	0.989798	-4.17392
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 47 sec
Have a good day !

Output of reg_resample -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/BetStroke_mask.nii.gz -trans /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/BetStroke_mask.nii.gz -trans /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz

Parameters
Reference image name: /aida/lib/average_template_50.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/BetStroke_mask.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz

Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt:

[NiftyReg F3D] Command line:
	 reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt

[NiftyReg F3D] OpenMP is used with 8 thread(s)
[NiftyReg F3D] **************************************************
[NiftyReg F3D] INPUT PARAMETERS
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Reference image:
[NiftyReg F3D] 	* name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Floating image:
[NiftyReg F3D] 	* name: /aida/lib/NP_template_sc0.nii.gz
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Warped image padding value: nan
[NiftyReg F3D]
[NiftyReg F3D] Level number: 3
[NiftyReg F3D]
[NiftyReg F3D] Maximum iteration number per level: 300
[NiftyReg F3D]
[NiftyReg F3D] Final spacing in mm: 3 3 3
[NiftyReg F3D]
[NiftyReg F3D] The NMI is used as a similarity measure.
[NiftyReg F3D] Similarity measure term weight: 0.695
[NiftyReg F3D]
[NiftyReg F3D] Bending energy penalty term weight: 0.005
[NiftyReg F3D]
[NiftyReg F3D] Linear energy penalty term weights: 0 0
[NiftyReg F3D]
[NiftyReg F3D] L2 norm of the displacement penalty term weights: 0
[NiftyReg F3D]
[NiftyReg F3D] Jacobian-based penalty term weight: 0.3
[NiftyReg F3D] 	* Jacobian-based penalty term is approximated
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 1 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 64 x 64 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.273438 x 0.273438 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 57 x 40 x 66 x 1
[NiftyReg F3D] 	* image spacing: 0.2 x 0.2 x 0.2 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 5 x 5 x 5
[NiftyReg F3D] 	* image spacing: 12 x 12 x 12 mm
[NiftyReg F3D] Initial objective function: 0.783453 = (wSIM)0.790721 - (wBE)1.82751e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00726774
[NiftyReg F3D] [9] Current objective function: 0.783535 = (wSIM)0.790838 - (wBE)6.13e-08 - (wJAC)7.30e-03 [+ 0.3 mm]
[NiftyReg F3D] [17] Current objective function: 0.783535 = (wSIM)0.790838 - (wBE)6.13e-08 - (wJAC)7.30e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 2 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 128 x 128 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.136719 x 0.136719 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 114 x 80 x 132 x 1
[NiftyReg F3D] 	* image spacing: 0.1 x 0.1 x 0.1 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 6 x 6 x 6
[NiftyReg F3D] 	* image spacing: 6 x 6 x 6 mm
[NiftyReg F3D] Initial objective function: 0.777417 = (wSIM)0.784787 - (wBE)1.17635e-07 - (wLE)0 - (wL2)0 - (wJAC)0.0073698
[NiftyReg F3D] [9] Current objective function: 0.781137 = (wSIM)0.788437 - (wBE)5.06e-07 - (wJAC)7.30e-03 [+ 0.3 mm]
[NiftyReg F3D] [17] Current objective function: 0.781137 = (wSIM)0.788437 - (wBE)5.06e-07 - (wJAC)7.30e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 3 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 9 x 9 x 8
[NiftyReg F3D] 	* image spacing: 3 x 3 x 3 mm
[NiftyReg F3D] Initial objective function: 0.774162 = (wSIM)0.781456 - (wBE)8.09506e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00729316
[NiftyReg F3D] [9] Current objective function: 0.775296 = (wSIM)0.782619 - (wBE)7.52e-06 - (wJAC)7.32e-03 [+ 0.3 mm]
[NiftyReg F3D] [18] Current objective function: 0.775714 = (wSIM)0.783052 - (wBE)2.44e-05 - (wJAC)7.31e-03 [+ 0.15 mm]
[NiftyReg F3D] [27] Current objective function: 0.778534 = (wSIM)0.785817 - (wBE)2.63e-05 - (wJAC)7.26e-03 [+ 0.2325 mm]
[NiftyReg F3D] [36] Current objective function: 0.778662 = (wSIM)0.785894 - (wBE)3.80e-05 - (wJAC)7.19e-03 [+ 0.2325 mm]
[NiftyReg F3D] [45] Current objective function: 0.778675 = (wSIM)0.78588 - (wBE)5.10e-05 - (wJAC)7.15e-03 [+ 0.058125 mm]
[NiftyReg F3D] [53] Current objective function: 0.779127 = (wSIM)0.786313 - (wBE)7.03e-05 - (wJAC)7.12e-03 [+ 0.122063 mm]
[NiftyReg F3D] [61] Current objective function: 0.779588 = (wSIM)0.786772 - (wBE)8.59e-05 - (wJAC)7.10e-03 [+ 0.122063 mm]
[NiftyReg F3D] [70] Current objective function: 0.780173 = (wSIM)0.787343 - (wBE)1.39e-04 - (wJAC)7.03e-03 [+ 0.189197 mm]
[NiftyReg F3D] [79] Current objective function: 0.780717 = (wSIM)0.787865 - (wBE)1.62e-04 - (wJAC)6.99e-03 [+ 0.0945984 mm]
[NiftyReg F3D] [88] Current objective function: 0.78093 = (wSIM)0.788042 - (wBE)1.78e-04 - (wJAC)6.93e-03 [+ 0.107606 mm]
[NiftyReg F3D] [96] Current objective function: 0.781081 = (wSIM)0.78816 - (wBE)1.97e-04 - (wJAC)6.88e-03 [+ 0.0538029 mm]
[NiftyReg F3D] [105] Current objective function: 0.781365 = (wSIM)0.788415 - (wBE)2.13e-04 - (wJAC)6.84e-03 [+ 0.117055 mm]
[NiftyReg F3D] [114] Current objective function: 0.781545 = (wSIM)0.788541 - (wBE)2.40e-04 - (wJAC)6.76e-03 [+ 0.149245 mm]
[NiftyReg F3D] [122] Current objective function: 0.781908 = (wSIM)0.788823 - (wBE)2.75e-04 - (wJAC)6.64e-03 [+ 0.149245 mm]
[NiftyReg F3D] [131] Current objective function: 0.782318 = (wSIM)0.789103 - (wBE)3.63e-04 - (wJAC)6.42e-03 [+ 0.313414 mm]
[NiftyReg F3D] [140] Current objective function: 0.782352 = (wSIM)0.789064 - (wBE)4.47e-04 - (wJAC)6.27e-03 [+ 0.075 mm]
[NiftyReg F3D] [148] Current objective function: 0.782674 = (wSIM)0.789334 - (wBE)4.97e-04 - (wJAC)6.16e-03 [+ 0.0853125 mm]
[NiftyReg F3D] [155] Current objective function: 0.782806 = (wSIM)0.789431 - (wBE)5.27e-04 - (wJAC)6.10e-03 [+ 0.0853125 mm]
[NiftyReg F3D] [164] Current objective function: 0.783017 = (wSIM)0.789598 - (wBE)5.72e-04 - (wJAC)6.01e-03 [+ 0.0911777 mm]
[NiftyReg F3D] [173] Current objective function: 0.783455 = (wSIM)0.790017 - (wBE)5.88e-04 - (wJAC)5.97e-03 [+ 0.141325 mm]
[NiftyReg F3D] [181] Current objective function: 0.783483 = (wSIM)0.790028 - (wBE)5.99e-04 - (wJAC)5.95e-03 [+ 0.0353314 mm]
[NiftyReg F3D] [188] Current objective function: 0.783674 = (wSIM)0.790193 - (wBE)6.02e-04 - (wJAC)5.92e-03 [+ 0.0741959 mm]
[NiftyReg F3D] [194] Current objective function: 0.783674 = (wSIM)0.790193 - (wBE)6.02e-04 - (wJAC)5.92e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] Registration Performed in 3 min 28 sec
[NiftyReg F3D] Have a good day !

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/average_template_50.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz

Registration completed