Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt: [NiftyReg ALADIN] Command line: reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt [reg_aladin_sym] Parameters [reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz [reg_aladin_sym] 256x256x48 voxels [reg_aladin_sym] 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz [reg_aladin_sym] 228x160x264 voxels [reg_aladin_sym] 0.05x0.05x0.05 mm [reg_aladin_sym] Maximum iteration number: 5 (10 during the first level) [reg_aladin_sym] Percentage of blocks: 50 % * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Current level 1 / 3 [reg_aladin_sym] reference image size: 64x64x48 voxels 0.273438x0.273438x0.3 mm [reg_aladin_sym] floating image size: 57x40x66 voxels 0.2x0.2x0.2 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [16 16 12] [reg_aladin_sym] Backward Block number = [15 10 17] [reg_aladin_sym] Initial forward transformation matrix:: 1 0 0 -8.725 0 1 0 -11.325 0 0 1 -4.575 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 1 0 0 8.725 0 1 0 11.325 0 0 1 4.575 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.03568 -0.00934521 0.0205159 -8.57843 0.0120062 1.14376 -0.0141325 -12.8529 0.0138954 -0.00327939 0.980826 -4.34685 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.965724 0.00783293 -0.0200871 8.29775 -0.0103067 0.874259 0.0128126 11.2041 -0.0137159 0.00281212 1.01988 4.35174 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 2 / 3 [reg_aladin_sym] reference image size: 128x128x48 voxels 0.136719x0.136719x0.3 mm [reg_aladin_sym] floating image size: 114x80x132 voxels 0.1x0.1x0.1 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [32 32 12] [reg_aladin_sym] Backward Block number = [29 20 33] [reg_aladin_sym] Initial forward transformation matrix:: 1.03568 -0.00934521 0.0205159 -8.57843 0.0120062 1.14376 -0.0141325 -12.8529 0.0138954 -0.00327939 0.980826 -4.34685 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 0.965724 0.00783293 -0.0200871 8.29775 -0.0103067 0.874259 0.0128126 11.2041 -0.0137159 0.00281212 1.01988 4.35174 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.04089 -0.0129004 0.0125845 -8.53914 0.00520469 1.13963 -0.0176788 -12.7346 -0.00428085 -0.00564631 0.991379 -4.20659 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.960617 0.0108145 -0.0120012 8.29008 -0.00432318 0.877508 0.015703 11.2039 0.00412339 0.00504446 1.00873 4.34278 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 3 / 3 [reg_aladin_sym] reference image size: 256x256x48 voxels 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] floating image size: 228x160x264 voxels 0.05x0.05x0.05 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [64 64 12] [reg_aladin_sym] Backward Block number = [57 40 66] [reg_aladin_sym] Initial forward transformation matrix:: 1.04089 -0.0129004 0.0125845 -8.53914 0.00520469 1.13963 -0.0176788 -12.7346 -0.00428085 -0.00564631 0.991379 -4.20659 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 0.960617 0.0108145 -0.0120012 8.29008 -0.00432318 0.877508 0.015703 11.2039 0.00412339 0.00504446 1.00873 4.34278 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.04039 -0.00699494 0.0163233 -8.61158 0.00469333 1.14758 -0.0192663 -12.8127 0.00569423 0.00799201 0.978553 -4.30619 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.961238 0.00596996 -0.015917 8.28572 -0.00402459 0.871255 0.0172209 11.2026 -0.0055606 -0.00715043 1.02187 4.26086 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Registration Performed in 2 min 28 sec Have a good day ! Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt: [NiftyReg ALADIN] Command line: reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt [reg_aladin_sym] Parameters [reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz [reg_aladin_sym] 228x160x264 voxels [reg_aladin_sym] 0.05x0.05x0.05 mm [reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz [reg_aladin_sym] 256x256x48 voxels [reg_aladin_sym] 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] Maximum iteration number: 5 (10 during the first level) [reg_aladin_sym] Percentage of blocks: 50 % * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Current level 1 / 3 [reg_aladin_sym] reference image size: 57x40x66 voxels 0.2x0.2x0.2 mm [reg_aladin_sym] floating image size: 64x64x48 voxels 0.273438x0.273438x0.3 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [15 10 17] [reg_aladin_sym] Backward Block number = [16 16 12] [reg_aladin_sym] Initial forward transformation matrix:: 1 0 0 8.725 0 1 0 11.325 0 0 1 4.575 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 1 0 0 -8.725 0 1 0 -11.325 0 0 1 -4.575 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 0.980136 -0.0110158 -0.0131321 8.2252 0.00481809 0.930529 -0.00379668 11.4309 -0.0159363 0.0511952 1.03633 4.44345 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 1.02042 0.0113662 0.0129722 -8.58074 -0.00521846 1.07438 0.00386998 -12.2554 0.0159496 -0.0529005 0.964956 -3.81422 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 2 / 3 [reg_aladin_sym] reference image size: 114x80x132 voxels 0.1x0.1x0.1 mm [reg_aladin_sym] floating image size: 128x128x48 voxels 0.136719x0.136719x0.3 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [29 20 33] [reg_aladin_sym] Backward Block number = [32 32 12] [reg_aladin_sym] Initial forward transformation matrix:: 0.980136 -0.0110158 -0.0131321 8.2252 0.00481809 0.930529 -0.00379668 11.4309 -0.0159363 0.0511952 1.03633 4.44345 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 1.02042 0.0113662 0.0129722 -8.58074 -0.00521846 1.07438 0.00386998 -12.2554 0.0159496 -0.0529005 0.964956 -3.81422 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 0.980247 0.00748211 -0.0194967 8.27711 -0.00743598 0.901599 0.0119601 11.3091 -0.0072428 0.0319719 1.00959 4.39554 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 1.02023 -0.00916909 0.0198108 -8.42792 0.00832078 1.10953 -0.0129834 -12.5596 0.00705563 -0.0352028 0.991057 -4.01652 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 3 / 3 [reg_aladin_sym] reference image size: 228x160x264 voxels 0.05x0.05x0.05 mm [reg_aladin_sym] floating image size: 256x256x48 voxels 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [57 40 66] [reg_aladin_sym] Backward Block number = [64 64 12] [reg_aladin_sym] Initial forward transformation matrix:: 0.980247 0.00748211 -0.0194967 8.27711 -0.00743598 0.901599 0.0119601 11.3091 -0.0072428 0.0319719 1.00959 4.39554 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 1.02023 -0.00916909 0.0198108 -8.42792 0.00832078 1.10953 -0.0129834 -12.5596 0.00705563 -0.0352028 0.991057 -4.01652 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 0.979575 0.00858056 -0.0111535 8.27977 -0.00897752 0.900527 0.0214051 11.2954 -0.0115081 0.0184412 1.01088 4.35379 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 1.02089 -0.00996245 0.011475 -8.3902 0.00990553 1.11085 -0.0234126 -12.5275 0.0114414 -0.0203783 0.989798 -4.17392 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Registration Performed in 2 min 47 sec Have a good day ! Output of reg_resample -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/BetStroke_mask.nii.gz -trans /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/BetStroke_mask.nii.gz -trans /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixInv.txt -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz Parameters Reference image name: /aida/lib/average_template_50.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/BetStroke_mask.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt: [NiftyReg F3D] Command line: reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixAff.txt [NiftyReg F3D] OpenMP is used with 8 thread(s) [NiftyReg F3D] ************************************************** [NiftyReg F3D] INPUT PARAMETERS [NiftyReg F3D] ************************************************** [NiftyReg F3D] Reference image: [NiftyReg F3D] * name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz [NiftyReg F3D] * image dimension: 256 x 256 x 48 x 1 [NiftyReg F3D] * image spacing: 0.0683594 x 0.0683594 x 0.3 mm [NiftyReg F3D] * intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38] [NiftyReg F3D] * gaussian smoothing sigma: 0 [NiftyReg F3D] [NiftyReg F3D] Floating image: [NiftyReg F3D] * name: /aida/lib/NP_template_sc0.nii.gz [NiftyReg F3D] * image dimension: 228 x 160 x 264 x 1 [NiftyReg F3D] * image spacing: 0.05 x 0.05 x 0.05 mm [NiftyReg F3D] * intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38] [NiftyReg F3D] * gaussian smoothing sigma: 0 [NiftyReg F3D] [NiftyReg F3D] Warped image padding value: nan [NiftyReg F3D] [NiftyReg F3D] Level number: 3 [NiftyReg F3D] [NiftyReg F3D] Maximum iteration number per level: 300 [NiftyReg F3D] [NiftyReg F3D] Final spacing in mm: 3 3 3 [NiftyReg F3D] [NiftyReg F3D] The NMI is used as a similarity measure. [NiftyReg F3D] Similarity measure term weight: 0.695 [NiftyReg F3D] [NiftyReg F3D] Bending energy penalty term weight: 0.005 [NiftyReg F3D] [NiftyReg F3D] Linear energy penalty term weights: 0 0 [NiftyReg F3D] [NiftyReg F3D] L2 norm of the displacement penalty term weights: 0 [NiftyReg F3D] [NiftyReg F3D] Jacobian-based penalty term weight: 0.3 [NiftyReg F3D] * Jacobian-based penalty term is approximated [NiftyReg F3D] ************************************************** [NiftyReg F3D] Current level: 1 / 3 [NiftyReg F3D] Current reference image [NiftyReg F3D] * image dimension: 64 x 64 x 48 x 1 [NiftyReg F3D] * image spacing: 0.273438 x 0.273438 x 0.3 mm [NiftyReg F3D] Current floating image [NiftyReg F3D] * image dimension: 57 x 40 x 66 x 1 [NiftyReg F3D] * image spacing: 0.2 x 0.2 x 0.2 mm [NiftyReg F3D] Current control point image [NiftyReg F3D] * image dimension: 5 x 5 x 5 [NiftyReg F3D] * image spacing: 12 x 12 x 12 mm [NiftyReg F3D] Initial objective function: 0.783453 = (wSIM)0.790721 - (wBE)1.82751e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00726774 [NiftyReg F3D] [9] Current objective function: 0.783535 = (wSIM)0.790838 - (wBE)6.13e-08 - (wJAC)7.30e-03 [+ 0.3 mm] [NiftyReg F3D] [17] Current objective function: 0.783535 = (wSIM)0.790838 - (wBE)6.13e-08 - (wJAC)7.30e-03 [+ 0 mm] [NiftyReg F3D] Current registration level done [NiftyReg F3D] -------------------------------------------------- [NiftyReg F3D] ************************************************** [NiftyReg F3D] Current level: 2 / 3 [NiftyReg F3D] Current reference image [NiftyReg F3D] * image dimension: 128 x 128 x 48 x 1 [NiftyReg F3D] * image spacing: 0.136719 x 0.136719 x 0.3 mm [NiftyReg F3D] Current floating image [NiftyReg F3D] * image dimension: 114 x 80 x 132 x 1 [NiftyReg F3D] * image spacing: 0.1 x 0.1 x 0.1 mm [NiftyReg F3D] Current control point image [NiftyReg F3D] * image dimension: 6 x 6 x 6 [NiftyReg F3D] * image spacing: 6 x 6 x 6 mm [NiftyReg F3D] Initial objective function: 0.777417 = (wSIM)0.784787 - (wBE)1.17635e-07 - (wLE)0 - (wL2)0 - (wJAC)0.0073698 [NiftyReg F3D] [9] Current objective function: 0.781137 = (wSIM)0.788437 - (wBE)5.06e-07 - (wJAC)7.30e-03 [+ 0.3 mm] [NiftyReg F3D] [17] Current objective function: 0.781137 = (wSIM)0.788437 - (wBE)5.06e-07 - (wJAC)7.30e-03 [+ 0 mm] [NiftyReg F3D] Current registration level done [NiftyReg F3D] -------------------------------------------------- [NiftyReg F3D] ************************************************** [NiftyReg F3D] Current level: 3 / 3 [NiftyReg F3D] Current reference image [NiftyReg F3D] * image dimension: 256 x 256 x 48 x 1 [NiftyReg F3D] * image spacing: 0.0683594 x 0.0683594 x 0.3 mm [NiftyReg F3D] Current floating image [NiftyReg F3D] * image dimension: 228 x 160 x 264 x 1 [NiftyReg F3D] * image spacing: 0.05 x 0.05 x 0.05 mm [NiftyReg F3D] Current control point image [NiftyReg F3D] * image dimension: 9 x 9 x 8 [NiftyReg F3D] * image spacing: 3 x 3 x 3 mm [NiftyReg F3D] Initial objective function: 0.774162 = (wSIM)0.781456 - (wBE)8.09506e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00729316 [NiftyReg F3D] [9] Current objective function: 0.775296 = (wSIM)0.782619 - (wBE)7.52e-06 - (wJAC)7.32e-03 [+ 0.3 mm] [NiftyReg F3D] [18] Current objective function: 0.775714 = (wSIM)0.783052 - (wBE)2.44e-05 - (wJAC)7.31e-03 [+ 0.15 mm] [NiftyReg F3D] [27] Current objective function: 0.778534 = (wSIM)0.785817 - (wBE)2.63e-05 - (wJAC)7.26e-03 [+ 0.2325 mm] [NiftyReg F3D] [36] Current objective function: 0.778662 = (wSIM)0.785894 - (wBE)3.80e-05 - (wJAC)7.19e-03 [+ 0.2325 mm] [NiftyReg F3D] [45] Current objective function: 0.778675 = (wSIM)0.78588 - (wBE)5.10e-05 - (wJAC)7.15e-03 [+ 0.058125 mm] [NiftyReg F3D] [53] Current objective function: 0.779127 = (wSIM)0.786313 - (wBE)7.03e-05 - (wJAC)7.12e-03 [+ 0.122063 mm] [NiftyReg F3D] [61] Current objective function: 0.779588 = (wSIM)0.786772 - (wBE)8.59e-05 - (wJAC)7.10e-03 [+ 0.122063 mm] [NiftyReg F3D] [70] Current objective function: 0.780173 = (wSIM)0.787343 - (wBE)1.39e-04 - (wJAC)7.03e-03 [+ 0.189197 mm] [NiftyReg F3D] [79] Current objective function: 0.780717 = (wSIM)0.787865 - (wBE)1.62e-04 - (wJAC)6.99e-03 [+ 0.0945984 mm] [NiftyReg F3D] [88] Current objective function: 0.78093 = (wSIM)0.788042 - (wBE)1.78e-04 - (wJAC)6.93e-03 [+ 0.107606 mm] [NiftyReg F3D] [96] Current objective function: 0.781081 = (wSIM)0.78816 - (wBE)1.97e-04 - (wJAC)6.88e-03 [+ 0.0538029 mm] [NiftyReg F3D] [105] Current objective function: 0.781365 = (wSIM)0.788415 - (wBE)2.13e-04 - (wJAC)6.84e-03 [+ 0.117055 mm] [NiftyReg F3D] [114] Current objective function: 0.781545 = (wSIM)0.788541 - (wBE)2.40e-04 - (wJAC)6.76e-03 [+ 0.149245 mm] [NiftyReg F3D] [122] Current objective function: 0.781908 = (wSIM)0.788823 - (wBE)2.75e-04 - (wJAC)6.64e-03 [+ 0.149245 mm] [NiftyReg F3D] [131] Current objective function: 0.782318 = (wSIM)0.789103 - (wBE)3.63e-04 - (wJAC)6.42e-03 [+ 0.313414 mm] [NiftyReg F3D] [140] Current objective function: 0.782352 = (wSIM)0.789064 - (wBE)4.47e-04 - (wJAC)6.27e-03 [+ 0.075 mm] [NiftyReg F3D] [148] Current objective function: 0.782674 = (wSIM)0.789334 - (wBE)4.97e-04 - (wJAC)6.16e-03 [+ 0.0853125 mm] [NiftyReg F3D] [155] Current objective function: 0.782806 = (wSIM)0.789431 - (wBE)5.27e-04 - (wJAC)6.10e-03 [+ 0.0853125 mm] [NiftyReg F3D] [164] Current objective function: 0.783017 = (wSIM)0.789598 - (wBE)5.72e-04 - (wJAC)6.01e-03 [+ 0.0911777 mm] [NiftyReg F3D] [173] Current objective function: 0.783455 = (wSIM)0.790017 - (wBE)5.88e-04 - (wJAC)5.97e-03 [+ 0.141325 mm] [NiftyReg F3D] [181] Current objective function: 0.783483 = (wSIM)0.790028 - (wBE)5.99e-04 - (wJAC)5.95e-03 [+ 0.0353314 mm] [NiftyReg F3D] [188] Current objective function: 0.783674 = (wSIM)0.790193 - (wBE)6.02e-04 - (wJAC)5.92e-03 [+ 0.0741959 mm] [NiftyReg F3D] [194] Current objective function: 0.783674 = (wSIM)0.790193 - (wBE)6.02e-04 - (wJAC)5.92e-03 [+ 0 mm] [NiftyReg F3D] Current registration level done [NiftyReg F3D] -------------------------------------------------- [NiftyReg F3D] Registration Performed in 3 min 28 sec [NiftyReg F3D] Have a good day ! Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/average_template_50.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/annoVolume.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_Anno.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m1/ses-P5/anat/sub-SPsV1c1m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz Registration completed