testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/registration.log

Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixAff.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixAff.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] floating image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [16 16 12]
[reg_aladin_sym] Backward Block number = [15 10 17]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.03121	-0.070096	0.0416179	-8.52808
0.0673405	1.12529	0.0527747	-13.1878
-0.0521392	-0.0500029	0.970681	-3.0015
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.963691	0.0580536	-0.0444744	8.85054
-0.0599528	0.882908	-0.0454321	10.996
0.0486754	0.0485997	1.02548	4.134
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] floating image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [32 32 12]
[reg_aladin_sym] Backward Block number = [29 20 33]
[reg_aladin_sym] Initial forward transformation matrix::
1.03121	-0.070096	0.0416179	-8.52808
0.0673405	1.12529	0.0527747	-13.1878
-0.0521392	-0.0500029	0.970681	-3.0015
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.963691	0.0580536	-0.0444744	8.85054
-0.0599528	0.882908	-0.0454321	10.996
0.0486754	0.0485997	1.02548	4.134
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.02678	-0.0566444	0.04973	-8.63747
0.0686745	1.12366	0.0536754	-13.1961
-0.0560472	-0.0445195	0.979373	-3.03328
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.967966	0.0467468	-0.0517128	8.8208
-0.0616711	0.885041	-0.045374	11.0088
0.052591	0.0429067	1.01604	4.10238
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] floating image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [64 64 12]
[reg_aladin_sym] Backward Block number = [57 40 66]
[reg_aladin_sym] Initial forward transformation matrix::
1.02678	-0.0566444	0.04973	-8.63747
0.0686745	1.12366	0.0536754	-13.1961
-0.0560472	-0.0445195	0.979373	-3.03328
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.967966	0.0467468	-0.0517128	8.8208
-0.0616711	0.885041	-0.045374	11.0088
0.052591	0.0429067	1.01604	4.10238
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.02933	-0.0626773	0.0480637	-8.61014
0.0667888	1.13199	0.0485787	-13.2213
-0.0569631	-0.044734	0.982631	-3.02135
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.965409	0.0514871	-0.0497667	8.84266
-0.0592462	0.878517	-0.0405337	10.9826
0.0532675	0.042979	1.01295	4.08734
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 23 sec
Have a good day !

Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixInv.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixInv.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] floating image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [15 10 17]
[reg_aladin_sym] Backward Block number = [16 16 12]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.98537	0.0426158	-0.0500037	8.81749
-0.059595	0.91442	-0.0739214	11.1643
0.0320505	0.0840334	1.03502	4.18855
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.01028	-0.0512325	0.0451497	-8.52527
0.0629006	1.08327	0.0804065	-12.9854
-0.0363915	-0.0863646	0.958242	-2.72857
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] floating image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [29 20 33]
[reg_aladin_sym] Backward Block number = [32 32 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.98537	0.0426158	-0.0500037	8.81749
-0.059595	0.91442	-0.0739214	11.1643
0.0320505	0.0840334	1.03502	4.18855
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.01028	-0.0512325	0.0451497	-8.52527
0.0629006	1.08327	0.0804065	-12.9854
-0.0363915	-0.0863646	0.958242	-2.72857
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.972919	0.0576187	-0.0486056	8.84293
-0.0786788	0.912231	-0.0535567	11.136
0.0585278	0.0614532	1.01925	4.14257
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.01967	-0.0674418	0.0450821	-8.45259
0.0842096	1.08678	0.0611209	-13.1002
-0.0636294	-0.0616523	0.974844	-2.78914
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] floating image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [57 40 66]
[reg_aladin_sym] Backward Block number = [64 64 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.972919	0.0576187	-0.0486056	8.84293
-0.0786788	0.912231	-0.0535567	11.136
0.0585278	0.0614532	1.01925	4.14257
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.01967	-0.0674418	0.0450821	-8.45259
0.0842096	1.08678	0.0611209	-13.1002
-0.0636294	-0.0616523	0.974844	-2.78914
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.977969	0.0551501	-0.055361	8.85816
-0.0721884	0.901924	-0.0411862	11.0902
0.0434245	0.0484284	1.01971	4.10132
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.0154	-0.0649083	0.0525057	-8.49011
0.079125	1.10128	0.0487768	-13.1144
-0.0469991	-0.0495386	0.976121	-3.03766
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 6 sec
Have a good day !

Output of reg_resample -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/BetStroke_mask.nii.gz -trans /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixInv.txt -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/BetStroke_mask.nii.gz -trans /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixInv.txt -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz

Parameters
Reference image name: /aida/lib/average_template_50.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/BetStroke_mask.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_IncidenceData_mask.nii.gz

Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixAff.txt:

[NiftyReg F3D] Command line:
	 reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixAff.txt

[NiftyReg F3D] OpenMP is used with 8 thread(s)
[NiftyReg F3D] **************************************************
[NiftyReg F3D] INPUT PARAMETERS
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Reference image:
[NiftyReg F3D] 	* name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Floating image:
[NiftyReg F3D] 	* name: /aida/lib/NP_template_sc0.nii.gz
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Warped image padding value: nan
[NiftyReg F3D]
[NiftyReg F3D] Level number: 3
[NiftyReg F3D]
[NiftyReg F3D] Maximum iteration number per level: 300
[NiftyReg F3D]
[NiftyReg F3D] Final spacing in mm: 3 3 3
[NiftyReg F3D]
[NiftyReg F3D] The NMI is used as a similarity measure.
[NiftyReg F3D] Similarity measure term weight: 0.695
[NiftyReg F3D]
[NiftyReg F3D] Bending energy penalty term weight: 0.005
[NiftyReg F3D]
[NiftyReg F3D] Linear energy penalty term weights: 0 0
[NiftyReg F3D]
[NiftyReg F3D] L2 norm of the displacement penalty term weights: 0
[NiftyReg F3D]
[NiftyReg F3D] Jacobian-based penalty term weight: 0.3
[NiftyReg F3D] 	* Jacobian-based penalty term is approximated
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 1 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 64 x 64 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.273438 x 0.273438 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 57 x 40 x 66 x 1
[NiftyReg F3D] 	* image spacing: 0.2 x 0.2 x 0.2 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 5 x 5 x 5
[NiftyReg F3D] 	* image spacing: 12 x 12 x 12 mm
[NiftyReg F3D] Initial objective function: 0.787314 = (wSIM)0.793501 - (wBE)1.81939e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00618733
[NiftyReg F3D] [10] Current objective function: 0.789227 = (wSIM)0.795455 - (wBE)1.71e-08 - (wJAC)6.23e-03 [+ 0.155156 mm]
[NiftyReg F3D] [17] Current objective function: 0.789227 = (wSIM)0.795455 - (wBE)1.71e-08 - (wJAC)6.23e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 2 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 128 x 128 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.136719 x 0.136719 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 114 x 80 x 132 x 1
[NiftyReg F3D] 	* image spacing: 0.1 x 0.1 x 0.1 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 6 x 6 x 6
[NiftyReg F3D] 	* image spacing: 6 x 6 x 6 mm
[NiftyReg F3D] Initial objective function: 0.784711 = (wSIM)0.791002 - (wBE)3.28889e-08 - (wLE)0 - (wL2)0 - (wJAC)0.00629144
[NiftyReg F3D] [9] Current objective function: 0.786173 = (wSIM)0.792446 - (wBE)2.45e-07 - (wJAC)6.27e-03 [+ 0.15 mm]
[NiftyReg F3D] [18] Current objective function: 0.787487 = (wSIM)0.793779 - (wBE)2.20e-06 - (wJAC)6.29e-03 [+ 0.2325 mm]
[NiftyReg F3D] [27] Current objective function: 0.788167 = (wSIM)0.794393 - (wBE)9.20e-06 - (wJAC)6.22e-03 [+ 0.2325 mm]
[NiftyReg F3D] [36] Current objective function: 0.789616 = (wSIM)0.795688 - (wBE)2.14e-05 - (wJAC)6.05e-03 [+ 0.2325 mm]
[NiftyReg F3D] [45] Current objective function: 0.789827 = (wSIM)0.7958 - (wBE)3.87e-05 - (wJAC)5.93e-03 [+ 0.2325 mm]
[NiftyReg F3D] [53] Current objective function: 0.789827 = (wSIM)0.7958 - (wBE)3.87e-05 - (wJAC)5.93e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 3 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 9 x 9 x 8
[NiftyReg F3D] 	* image spacing: 3 x 3 x 3 mm
[NiftyReg F3D] Initial objective function: 0.782413 = (wSIM)0.788367 - (wBE)6.17625e-05 - (wLE)0 - (wL2)0 - (wJAC)0.00589204
[NiftyReg F3D] [9] Current objective function: 0.784543 = (wSIM)0.790392 - (wBE)5.35e-05 - (wJAC)5.80e-03 [+ 0.3 mm]
[NiftyReg F3D] [19] Current objective function: 0.785194 = (wSIM)0.790982 - (wBE)5.90e-05 - (wJAC)5.73e-03 [+ 0.155156 mm]
[NiftyReg F3D] [27] Current objective function: 0.785361 = (wSIM)0.79109 - (wBE)6.91e-05 - (wJAC)5.66e-03 [+ 0.155156 mm]
[NiftyReg F3D] [35] Current objective function: 0.785781 = (wSIM)0.791486 - (wBE)8.47e-05 - (wJAC)5.62e-03 [+ 0.155156 mm]
[NiftyReg F3D] [44] Current objective function: 0.786451 = (wSIM)0.792165 - (wBE)8.81e-05 - (wJAC)5.63e-03 [+ 0.17649 mm]
[NiftyReg F3D] [53] Current objective function: 0.786505 = (wSIM)0.792223 - (wBE)9.21e-05 - (wJAC)5.63e-03 [+ 0.0220613 mm]
[NiftyReg F3D] [60] Current objective function: 0.786662 = (wSIM)0.792367 - (wBE)9.21e-05 - (wJAC)5.61e-03 [+ 0.0463287 mm]
[NiftyReg F3D] [69] Current objective function: 0.786741 = (wSIM)0.792433 - (wBE)9.66e-05 - (wJAC)5.59e-03 [+ 0.0562025 mm]
[NiftyReg F3D] [82] Current objective function: 0.787227 = (wSIM)0.792917 - (wBE)1.43e-04 - (wJAC)5.55e-03 [+ 0.313293 mm]
[NiftyReg F3D] [91] Current objective function: 0.787551 = (wSIM)0.793234 - (wBE)1.97e-04 - (wJAC)5.49e-03 [+ 0.15 mm]
[NiftyReg F3D] [99] Current objective function: 0.787641 = (wSIM)0.793339 - (wBE)3.07e-04 - (wJAC)5.39e-03 [+ 0.15 mm]
[NiftyReg F3D] [107] Current objective function: 0.787666 = (wSIM)0.793384 - (wBE)3.49e-04 - (wJAC)5.37e-03 [+ 0.0375 mm]
[NiftyReg F3D] [116] Current objective function: 0.788023 = (wSIM)0.793756 - (wBE)3.45e-04 - (wJAC)5.39e-03 [+ 0.124125 mm]
[NiftyReg F3D] [124] Current objective function: 0.788058 = (wSIM)0.793778 - (wBE)3.43e-04 - (wJAC)5.38e-03 [+ 0.0620625 mm]
[NiftyReg F3D] [132] Current objective function: 0.788202 = (wSIM)0.793886 - (wBE)3.43e-04 - (wJAC)5.34e-03 [+ 0.0791297 mm]
[NiftyReg F3D] [139] Current objective function: 0.788265 = (wSIM)0.793897 - (wBE)3.45e-04 - (wJAC)5.29e-03 [+ 0.0791297 mm]
[NiftyReg F3D] [146] Current objective function: 0.788313 = (wSIM)0.79393 - (wBE)3.46e-04 - (wJAC)5.27e-03 [+ 0.0791297 mm]
[NiftyReg F3D] [153] Current objective function: 0.788374 = (wSIM)0.793982 - (wBE)3.49e-04 - (wJAC)5.26e-03 [+ 0.0791297 mm]
[NiftyReg F3D] [160] Current objective function: 0.788379 = (wSIM)0.793971 - (wBE)3.52e-04 - (wJAC)5.24e-03 [+ 0.0395648 mm]
[NiftyReg F3D] [167] Current objective function: 0.788599 = (wSIM)0.794162 - (wBE)3.55e-04 - (wJAC)5.21e-03 [+ 0.0830862 mm]
[NiftyReg F3D] [174] Current objective function: 0.788614 = (wSIM)0.794152 - (wBE)3.59e-04 - (wJAC)5.18e-03 [+ 0.0207715 mm]
[NiftyReg F3D] [183] Current objective function: 0.788716 = (wSIM)0.794263 - (wBE)3.60e-04 - (wJAC)5.19e-03 [+ 0.0596429 mm]
[NiftyReg F3D] [190] Current objective function: 0.788723 = (wSIM)0.794269 - (wBE)3.61e-04 - (wJAC)5.18e-03 [+ 0.0149107 mm]
[NiftyReg F3D] [198] Current objective function: 0.788759 = (wSIM)0.79429 - (wBE)3.64e-04 - (wJAC)5.17e-03 [+ 0.0592776 mm]
[NiftyReg F3D] [206] Current objective function: 0.788762 = (wSIM)0.794285 - (wBE)3.67e-04 - (wJAC)5.16e-03 [+ 0.0188947 mm]
[NiftyReg F3D] [212] Current objective function: 0.78879 = (wSIM)0.794319 - (wBE)3.67e-04 - (wJAC)5.16e-03 [+ 0.0240908 mm]
[NiftyReg F3D] [218] Current objective function: 0.788791 = (wSIM)0.79432 - (wBE)3.68e-04 - (wJAC)5.16e-03 [+ 0.00602269 mm]
[NiftyReg F3D] [224] Current objective function: 0.7888 = (wSIM)0.794323 - (wBE)3.72e-04 - (wJAC)5.15e-03 [+ 0.0162914 mm]
[NiftyReg F3D] [232] Current objective function: 0.78885 = (wSIM)0.794358 - (wBE)3.75e-04 - (wJAC)5.13e-03 [+ 0.0494892 mm]
[NiftyReg F3D] [239] Current objective function: 0.78885 = (wSIM)0.794343 - (wBE)3.79e-04 - (wJAC)5.11e-03 [+ 0.0247446 mm]
[NiftyReg F3D] [247] Current objective function: 0.788899 = (wSIM)0.794387 - (wBE)3.86e-04 - (wJAC)5.10e-03 [+ 0.0669341 mm]
[NiftyReg F3D] [254] Current objective function: 0.788911 = (wSIM)0.794384 - (wBE)3.95e-04 - (wJAC)5.08e-03 [+ 0.0334671 mm]
[NiftyReg F3D] [262] Current objective function: 0.789037 = (wSIM)0.794479 - (wBE)4.03e-04 - (wJAC)5.04e-03 [+ 0.0804046 mm]
[NiftyReg F3D] [269] Current objective function: 0.789059 = (wSIM)0.794468 - (wBE)4.16e-04 - (wJAC)4.99e-03 [+ 0.0402023 mm]
[NiftyReg F3D] [278] Current objective function: 0.789155 = (wSIM)0.794563 - (wBE)4.24e-04 - (wJAC)4.98e-03 [+ 0.0874651 mm]
[NiftyReg F3D] [284] Current objective function: 0.789155 = (wSIM)0.794563 - (wBE)4.24e-04 - (wJAC)4.98e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] Registration Performed in 1 min 31 sec
[NiftyReg F3D] Have a good day !

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/average_template_50.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_TemplateAllen.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Anno_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Anno.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Anno.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_Anno.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c2m1/ses-P5/anat/sub-SPsV1c2m1_ses-P5_T2wBiasBet_AnnoSplit.nii.gz

Registration completed