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Aswendt_Lab
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2024_Ruthe_SND
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2024_Ruthe_SND
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arefks 13cb663094 added all of the code necessery 9 mesi fa
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.ipynb_checkpoints e8e54e0207 current state: code is finished for representation 9 mesi fa
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery 9 mesi fa
mouse_connectivity e8e54e0207 current state: code is finished for representation 9 mesi fa
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation 9 mesi fa
README.md 13cb663094 added all of the code necessery 9 mesi fa
mask2MTPL.py 13cb663094 added all of the code necessery 9 mesi fa
overlayPlot.py 86fce3a119 current state: code is finished for representation 9 mesi fa
overlayPlot3D.py 13cb663094 added all of the code necessery 9 mesi fa
register_masks.py 13cb663094 added all of the code necessery 9 mesi fa

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered