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Aswendt_Lab
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2024_Ruthe_SND
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2024_Ruthe_SND
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output
lucaruthe 3a00758ecf Merge remote-tracking branch 'origin/master' пре 9 месеци
..
Nifti_Trakte e8e54e0207 current state: code is finished for representation пре 9 месеци
Nifti_Trakte_V2 8ae1cd122e updated tracts пре 9 месеци
Nifti_Trakte_registered e8e54e0207 current state: code is finished for representation пре 9 месеци
Tract_Density fa5effbbd2 I added a tract density folder пре 9 месеци
figures e8e54e0207 current state: code is finished for representation пре 9 месеци
.DS_Store fa5effbbd2 I added a tract density folder пре 9 месеци
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output пре 10 месеци
README.md 2723871d8b updated READme пре 9 месеци
affineTrafo.txt 45782701c4 updated input and output пре 10 месеци

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).