We use cookies to ensure you get the best experience on our website
Domů Procházet Nápověda News
Registrovat se Přihlásit se
Aswendt_Lab
/
2024_Ruthe_SND
8
0
Rozštěpit 0
Soubory Úkoly 0 Pull Requesty 0 Wiki
Strom: 13cb663094
Větve Značky
2024_Ruthe_SND
/
input
arefks e8e54e0207 current state: code is finished for representation před 9 měsíci
..
C57BL6_mouse 45782701c4 updated input and output před 10 měsíci
del e8e54e0207 current state: code is finished for representation před 9 měsíci
12_wks_coronal_100141780_100um_projection_density.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci
12_wks_coronal_100141780_50um_projection_density.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci
C57BL6_mouse_fiber.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci
C57BL6_mouse_iso.nii.gz 45782701c4 updated input and output před 10 měsíci
NP_template_sc0.nii.gz 45782701c4 updated input and output před 10 měsíci
README.md 7752f461af added some file před 9 měsíci
SSp_bfd5_Primary_somatosensory_area_barrel_field_layer_5.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci
average_template_100_from_website.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci
average_template_50_from_website.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci
fiber_registered.nii.gz e8e54e0207 current state: code is finished for representation před 9 měsíci

README.md

Inputs

  • C57BL6_mouse folder: The corresponding atlas folder from DSI Studio. This folder can also be found in the root directory where DSI Studio is installed.
  • C57BL6_mouse_iso.nii.gz: This is the iso NIFTI file created by loading the fib file from the C57BL6_mouse folder and saving the iso part of it as a NIFTI file. This file is equivalent to the C57BL6_mouse.ISO.nii.gz file in the C57BL6_mouse folder, which has a higher resolution. However, since the masks were drawn using the C57BL6_mouse.fib.gz file, this was saved separately.
  • NP_template_sc0.nii.gz: This is our in-house MRI template, also known as MTPL. Reference link to the paper: Frontiers in Neuroinformatics, and the GitHub repository: Aswendt-Lab/AIDAmri - SND_Mask_trafu branch.
  • ABtemplate_website.nii.gz: This was downloaded to be able to overlay it with viral tracing data and compare it with the masks drawn.
  • 12_wks_coronal_100141780_100um_projection_density.nrrd: Containes viral tracing projection data. (fits on ABtemplate_website).