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2021_Aswendt_GFAP_PT_4wks
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10.12751/g-node.yzjhz3
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Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice

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Markus Aswendt bbf15aad05 gin commit from ma-macpro-server.local 3 tahun lalu
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README.md

GFAP_PT_4wks

Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice; 6 time points over 4 weeks post photothrombotic stroke.

Files:

  • MRI_raw_data - contains all raw data in Bruker 2dseq format and the original Bruker folder structure
  • MRI_proc_data - contains all data processed with the AIDAmri pipeline. Processing steps: define stroke masks, convert Bruker to NIfTI-1 data format, image re-orientation, bias-field correction, brain extraction, region-of-interest segmentation, registration with the Allen Mouse Brain Atlas (CCFv3), functional connectivity analysis.

Authors:

Markus Aswendt, Ulrika Wilhelmsson, Frederique Wieters, Felix Schmitt, Niklas Pallast, Yolanda de Pablo, Lava Mohammed, Mathias Hoehn, Marcela Pekna, Milos Pekny