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enh: add metadata JSON sidecars

Oscar Esteban 1 month ago
parent
commit
63e636bf0b

+ 26 - 0
tpl-fsaverage_atlas-Desikan2006_dseg.json

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+{
+  "Authors":
+  [
+    "Desikan RS",
+    "Killiany RJ"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "DescriptionEntity":
+  {
+    "original": "Contains the file as converted with `mris_convert` directly from FreeSurfer's distribution",
+    "curated": "The 'original' version after manual correction of errors by Aleman-Gomez Y."
+  },
+  "Identifier": "Desikan2006",
+  "License": "See LICENSE file",
+  "Name": "Desikan-Killiany Atlas distributed by FreeSurfer 7",
+  "Provenance": "Converted with `mris_convert` from `$FREESURFER_HOME/subjects/fsaverage{,3,4,5,6}/label/{l,r}h.aparc.annot`",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1016/j.neuroimage.2006.01.021",
+    "https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation"
+  ]
+}

+ 25 - 0
tpl-fsaverage_atlas-Destrieux2005_dseg.json

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+{
+  "Authors":
+  [
+    "Destrieux C",
+    "Fischl B",
+    "Dale AM",
+    "Halgren E"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "Destrieux2005",
+  "License": "See LICENSE file",
+  "Name": "Destrieux Atlas (2005) distributed by FreeSurfer 7",
+  "DeprecationNote": "This atlas was updated in 2009 and Destrieux2009 SHOULD be used instead",
+  "Provenance": "Converted with `mris_convert` from `$FREESURFER_HOME/subjects/fsaverage{,3,4,5,6}/label/{l,r}h.aparc.a2005s.annot`",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1016/j.neuroimage.2010.06.010",
+    "https://doi.org/10.1016/S1053-8119(09)71561-7",
+    "https://surfer.nmr.mgh.harvard.edu/fswiki/DestrieuxAtlasChanges"
+  ]
+}

+ 24 - 0
tpl-fsaverage_atlas-Destrieux2009_dseg.json

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+{
+  "Authors":
+  [
+    "Destrieux C",
+    "Fischl B",
+    "Dale AM",
+    "Halgren E"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "Destrieux2009",
+  "License": "See LICENSE file",
+  "Name": "Destrieux Atlas (updated 2009) distributed by FreeSurfer 7",
+  "Provenance": "Converted with `mris_convert` from `$FREESURFER_HOME/subjects/fsaverage{,3,4,5,6}/label/{l,r}h.aparc.a2009s.annot`",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1016/j.neuroimage.2010.06.010",
+    "https://doi.org/10.1016/S1053-8119(09)71561-7",
+    "https://surfer.nmr.mgh.harvard.edu/fswiki/DestrieuxAtlasChanges"
+  ]
+}

+ 21 - 0
tpl-fsaverage_atlas-Lausanne2018_dseg.json

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+{
+  "Authors":
+  [
+    "Aleman-Gomez Y",
+    "Cammoun L",
+    "Hagmann P"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "Lausanne2018",
+  "License": "CC-BY-4",
+  "Name": "Lausanne multi-scale cortical parcellation",
+  "Description": "Symmetric version of the original parcellation by (Cammoun et al., 2012)",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1016/j.jneumeth.2011.09.031"
+  ]
+}

+ 20 - 0
tpl-fsaverage_atlas-Sabuncu2011_dseg.json

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+{
+  "Authors":
+  [
+    "Sabuncu MR"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "Sabuncu2011",
+  "License": "See LICENSE file",
+  "Name": "'Cortical Hubs' (CHubs) from the OASIS template, distributed by FreeSurfer 7",
+  "Provenance": "Converted with `mris_convert` from `$FREESURFER_HOME/subjects/fsaverage{,3,4,5,6}/label/{l,r}h.oasis.chubs.annot`",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1001/archneurol.2011.167",
+    "https://surfer.nmr.mgh.harvard.edu/fswiki/Chubs"
+  ]
+}

+ 21 - 0
tpl-fsaverage_atlas-Schaefer2018_dseg.json

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+{
+  "Authors":
+  [
+    "Schaefer A",
+    "Yeo BT"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "Schaefer2018",
+  "License": "See LICENSE file",
+  "Name": "Local-Global Parcellation of the Human Cerebral Cortex from Intrinsic Functional Connectivity MRI",
+  "Description": "Multi-scale cortical parcellation — ten scales going from 100 to 1000 parcels that are matched with Yeo2011's networks.",
+  "IsDerivedFrom": "Yeo2011",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1093/cercor/bhx179"
+  ]
+}

+ 21 - 0
tpl-fsaverage_atlas-Yeo2011_dseg.json

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+{
+  "Authors":
+  [
+    "Yeo BT",
+    "Buckner RL"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "Yeo2011",
+  "License": "See LICENSE file",
+  "Name": "Cortical Parcellation Estimated by Intrinsic Functional Connectivity, distributed by FreeSurfer 7",
+  "Provenance": "Converted with `mris_convert` from `$FREESURFER_HOME/subjects/fsaverage{,3,4,5,6}/label/{l,r}h.Yeo2011_{,1}7Networks_N1000.annot`",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1152/jn.00338.2011",
+    "https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011"
+  ]
+}

+ 18 - 0
tpl-fsaverage_atlas-brainnetome_dseg.json

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+{
+  "Authors":
+  [
+    "Fan L"
+  ],
+  "Curators":
+  [
+    "Aleman-Gomez Y",
+    "Esteban O"
+  ],
+  "Identifier": "brainnetome",
+  "License": "The atlas' data and metadata are the property of the Brainnetome Center. The Brainnetome makes this information available to researchers, scientists and others at colleges, universities, not-for-profit foundations and other similar institutions free of charge, subject to proper attribution and an agreement to share alike, for use for non-commercial purposes. Brainetome Center will consider granting a license to individuals and entities that wish to use the information, images and data for commercial purposes. Such requests should be made to Dr. Lingzhong Fan by e-mail:brainnetome.atlas@nlpr.ia.ac.cn",
+  "Name": "Brainnetome cortical parcellation",
+  "ReferencesAndLinks":
+  [
+    "https://doi.org/10.1093/cercor/bhw157"
+  ]
+}