13 Commits e18010aff8 ... 5e5ca0f769

Author SHA1 Message Date
  Julia Sprenger 5e5ca0f769 Remove trailing linebreak 11 months ago
  Julia Sprenger c31305b7ed Fix inconsistent channel parameters 11 months ago
  Julia Sprenger 1354d71cec Fix inconsistent contact parameters 11 months ago
  Julia Sprenger bbbcc345ed Update gin-cli config 11 months ago
  Julia Sprenger 46a6196754 Harmonize events.tsv files (fix tabulation, fix event onsets across runs) 11 months ago
  Julia Sprenger 8c293ac2cb Harmonize events.tsv files (add channel_id, fix event onsets across runs) 11 months ago
  Julia Sprenger e17758cade Add optional scans files 11 months ago
  Julia Sprenger 052742937e Harmonize dataset descriptors 11 months ago
  Julia Sprenger d8c90a471a Fix typo 11 months ago
  Julia Sprenger 94a7228489 Remove duplicate duplicate file 11 months ago
  Julia Sprenger 6a8589c6d5 [ENH] add complementary scans files 11 months ago
  Julia Sprenger 4951a9c941 Merge branch 'master' into takerkart_master 11 months ago
  Julia Sprenger 7053c1b7d2 gin commit from nit-ope-de04 11 months ago
33 changed files with 96 additions and 84 deletions
  1. 1 1
      config.yml
  2. 10 10
      ephys_nix/participants.json
  3. 5 0
      ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-101210_coordsystem.json
  4. BIN
      ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-101210_photo.png
  5. 2 2
      ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv
  6. 17 8
      ephys_nix/sub-i/sub-i_sessions.json
  7. 0 0
      ephys_nix/sub-i/sub-l_sessions.tsv
  8. BIN
      ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_photo.png
  9. 5 0
      ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_coordsystem.json
  10. 2 2
      ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv
  11. 17 8
      ephys_nix/sub-l/sub-l_sessions.json
  12. 1 2
      ephys_nix/sub-l/sub-l_sessions.tsv
  13. 0 12
      ephys_nix/tasks.json
  14. 0 2
      ephys_nix/tasks.tsv
  15. 3 3
      toy-dataset_patchclamp_multiple-records-per-file/dataset_description.json
  16. 2 2
      toy-dataset_patchclamp_multiple-records-per-file/sub-20220101A/ephys/sub-20220101A_ephys.json
  17. 4 4
      toy-dataset_patchclamp_multiple-records-per-file/sub-20220101A/ephys/sub-20220101A_events.tsv
  18. 2 0
      toy-dataset_patchclamp_multiple-records-per-file/sub-20220101A/sub-20220101A_scans.tsv
  19. 2 2
      toy-dataset_patchclamp_multiple-records-per-file/sub-20220101B/ephys/sub-20220101B_ephys.json
  20. 0 1
      toy-dataset_patchclamp_multiple-records-per-file/sub-20220101B/ephys/sub-20220101B_probes.tsv
  21. 2 0
      toy-dataset_patchclamp_multiple-records-per-file/sub-20220101B/sub-20220101B_scans.tsv
  22. 2 2
      toy-dataset_patchclamp_single-record-per-file/sub-20220101A/ephys/sub-20220101A_ephys.json
  23. 3 3
      toy-dataset_patchclamp_single-record-per-file/sub-20220101A/ephys/sub-20220101A_sample-cell001_run-1_events.tsv
  24. 3 3
      toy-dataset_patchclamp_single-record-per-file/sub-20220101A/ephys/sub-20220101A_sample-cell001_run-2_events.tsv
  25. 1 1
      toy-dataset_patchclamp_single-record-per-file/sub-20220101A/sub-20220101A_scans.tsv
  26. 0 4
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_contacts.tsv
  27. 2 2
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_ephys.json
  28. 1 1
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell002_contacts.tsv
  29. 3 3
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell002_events.tsv
  30. 1 1
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell003_channels.tsv
  31. 1 1
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell003_contacts.tsv
  32. 3 3
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell003_events.tsv
  33. 1 1
      toy-dataset_patchclamp_single-record-per-file/sub-20220101B/sub-20220101B_scans.tsv

+ 1 - 1
config.yml

@@ -1,3 +1,3 @@
 annex:
     minsize: 0
-    exclude: ["*README*", "*LICENSE*", "config*", "*.json", "*.tsv", "**/.git*"]
+    exclude: ["*README*", "*LICENSE*", "config*", "*.json", "*.tsv", "*.png", "*.jpg", "*.tif", "**/.git*"]

+ 10 - 10
ephys_nix/participants.json

@@ -1,29 +1,29 @@
 {
-  "SubjectID": {
+  "subject_id": {
     "Description": "Short identifier for monkey (e.g., used in file names)"
   },
-  "Species": {
+  "species": {
     "Description": "binomial species name (genus, species with genus)"
   },
-  "Sex": {
+  "sex": {
     "Description": "Sex of the animal (male/female)"
   },
-  "Birthdate": {
+  "birthdate": {
     "Description": "Date of birth"
   },
-  "Handedness": {
+  "handedness": {
     "Description": "Trained hand (left and/or right)"
   },
-  "SurgeryDate": {
+  "surgerydate": {
     "Description": "Date of the surgery"
   },
-  "Disabilities": {
+  "disabilities": {
     "Description": "Comment on existing disabilities"
   },
-  "Character": {
+  "character": {
     "Description": "Comment on the general character/personality"
   },
-  "GivenName": {
+  "given_name": {
     "Description": "Given Name"
   }
-}
+}

+ 5 - 0
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-101210_coordsystem.json

@@ -0,0 +1,5 @@
+{
+  "ephysCoordinateSystem": "Pixels”,
+  "ephysCoordinateUnits": "pixels",
+  "ephysCoordinateSystemPhoto": "bids:ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_photo.png",
+}

BIN
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-101210_photo.png


+ 2 - 2
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv

@@ -1,2 +1,2 @@
-probe_id	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
-Prob-8596-001139	utah array	M1	https://www.nature.com/articles/sdata201855/figures/1	right	Blackrock Microsystems	8596-001139	100	1.5	4	4	mm	Pt/Au	0.000025	0.04	m	RIKEN-BSI, Japan
+probe_id	type	location	x	y	z	alpha_rotation	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
+Prob-8596-001139	utah array	M1	211	345	n/a	239	right	Blackrock Microsystems	8596-001139	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan

+ 17 - 8
ephys_nix/sub-i/sub-i_sessions.json

@@ -1,23 +1,32 @@
 {
-  "SessionId": {
+  "session_id": {
     "Description": "Unique identifier of the session"
   },
-  "SessionQuality": {
+  "session_quality": {
     "Description": "General quality of the session (excellent/good/ok/bad)"
   },
-  "DataQuality": {
+  "data_quality": {
     "Description": "Quality of the recorded data (excellent/good/ok/bad)"
   },
-  "#Trials": {
+  "number_of_trials": {
     "Description": "Number of trial within the session"
   },
-  "Comment": {
+  "comment": {
     "Description": "Comment by the experimenter"
   },
-  "Weekday": {
+  "weekday": {
     "Description": "Day of the week the recording was performed (monday,tuesday,...)"
+    "Levels": {
+      "monday" : "The first day of the week",
+      "tuesday": "The second day of the week",
+      "wednesday": "The third day of the week",
+      "thursday" : "The fourth day of the week",
+      "friday": "The fifth day of the week",
+      "saturday": "The sixth day of the week",
+      "sunday": "The seventh day of the week"
+    }
   },
-  "Noisy": {
+  "noisy": {
     "Description": "Was noise observed in the data during the recording (yes/no)"
   }
-}
+}

ephys_nix/sub-i/sub-i_sessions.tsv → ephys_nix/sub-i/sub-l_sessions.tsv


BIN
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_photo.png


+ 5 - 0
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_coordsystem.json

@@ -0,0 +1,5 @@
+{
+  "ephysCoordinateSystem": "Pixels”,
+  "ephysCoordinateUnits": "pixels",
+  "ephysCoordinateSystemPhoto": "bids:ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_photo.png",
+}

+ 2 - 2
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv

@@ -1,2 +1,2 @@
-probe_id	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
-prob-1025-0503	utah array	M1	https://www.nature.com/articles/sdata201855/figures/1	right	Blackrock Microsystems	1025-0503	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan
+probe_id	type	location	hemisphere	x	y	z	alpha_rotation	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
+prob-1025-0503	utah array	M1	right	166	212	n/a	216	Blackrock Microsystems	1025-0503	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan

+ 17 - 8
ephys_nix/sub-l/sub-l_sessions.json

@@ -1,23 +1,32 @@
 {
-  "SessionId": {
+  "session_id": {
     "Description": "Unique identifier of the session"
   },
-  "SessionQuality": {
+  "session_quality": {
     "Description": "General quality of the session (excellent/good/ok/bad)"
   },
-  "DataQuality": {
+  "data_quality": {
     "Description": "Quality of the recorded data (excellent/good/ok/bad)"
   },
-  "#Trials": {
+  "number_of_trials": {
     "Description": "Number of trial within the session"
   },
-  "Comment": {
+  "comment": {
     "Description": "Comment by the experimenter"
   },
-  "Weekday": {
+  "weekday": {
     "Description": "Day of the week the recording was performed (monday,tuesday,...)"
+    "Levels": {
+      "monday" : "The first day of the week",
+      "tuesday": "The second day of the week",
+      "wednesday": "The third day of the week",
+      "thursday" : "The fourth day of the week",
+      "friday": "The fifth day of the week",
+      "saturday": "The sixth day of the week",
+      "sunday": "The seventh day of the week"
+    }
   },
-  "Noisy": {
+  "noisy": {
     "Description": "Was noise observed in the data during the recording (yes/no)"
   }
-}
+}

+ 1 - 2
ephys_nix/sub-l/sub-l_sessions.tsv

@@ -1,3 +1,2 @@
-"session_id
-"	session_quality	data_quality	#_trials	comment	weekday	noisy
+session_id	session_quality	data_quality	number_of_trials	comment	weekday	noisy
 101210	excellent	good	204	n/a	friday	yes

+ 0 - 12
ephys_nix/tasks.json

@@ -1,12 +0,0 @@
-{
-  "TaskID": {
-    "Description": "Unique identifier of the task",
-    "Level": {
-      "r2g": {
-        "Description": "A task that involves the reaching of an object and holding it for a specific time",
-        "LongName": "Reach-to-Grasp",
-        "task_type": "two-cue"
-      }
-    }
-  }
-}

+ 0 - 2
ephys_nix/tasks.tsv

@@ -1,2 +0,0 @@
-task_name
-task-r2g

+ 3 - 3
toy-dataset_patchclamp_multiple-records-per-file/dataset_description.json

@@ -1,10 +1,10 @@
 {
   "LICENCE": "CC-by 4.0",
-  "Name": "Electrophysiology",
+  "Name": "Toy example dataset for patchclamp recordings in BIDS",
   "BIDSVersion": "1.0.X",
   "License": "CC BY 4.0",
   "Authors": [
-    "Alice A",
-    "Bob B"
+    "Sprenger, Julia",
+    "Takerkart, Sylvain"
   ]
 }

+ 2 - 2
toy-dataset_patchclamp_multiple-records-per-file/sub-20220101A/ephys/sub-20220101A_ephys.json

@@ -7,11 +7,11 @@
     "Maintainer": "Charly C",
     "SoftwareFilters": {
       "LP_filter_1":{
-        "Half amplitude wutoff(Hz)": 0.0159,
+        "Half amplitude cutoff(Hz)": 0.0159,
         "Roll-off":"6dB/Octave"
       },
       "LP_filter_2":{
-        "Half amplitude wutoff(Hz)": 0.1159,
+        "Half amplitude cutoff(Hz)": 0.1159,
          "Roll-off":"9 dB/Octave"
       }
     }

+ 4 - 4
toy-dataset_patchclamp_multiple-records-per-file/sub-20220101A/ephys/sub-20220101A_events.tsv

@@ -1,5 +1,5 @@
 onset	duration	trial_type	data_entity_id	channel_id	sample_id	response_time	stim_type	stim_unit	stim_amplitude
-1.23	0.65	start	62342cc5-fe7d-4eca-b702-404f9e7f2ccd		chan-01		sample-cell001	1.435	square pulse	1	mV
-5.65	0.65	stop	3aca136f-0851-4eb4-bb37-2070b9745537		chan-02		sample-cell001	1.739	square pulse	5	mV
-6.21	0.65	start	cd16b031-5288-42f5-9a7f-17de24eb1004		chan-01		sample-cell001	2.43	square pulse	10	uA
-15.65	0.65	stop	b35b9e87-d232-4cb3-9d6a-f8797c859c83		chan-02		sample-cell001	5.68	square pulse	45	uA
+1.23	0.65	start	62342cc5-fe7d-4eca-b702-404f9e7f2ccd	chan-01	sample-cell001	1.435	square pulse	1	mV
+5.65	0.65	stop	3aca136f-0851-4eb4-bb37-2070b9745537	chan-02	sample-cell001	1.739	square pulse	5	mV
+6.21	0.65	start	cd16b031-5288-42f5-9a7f-17de24eb1004	chan-01	sample-cell001	2.43	square pulse	10	uA
+15.65	0.65	stop	b35b9e87-d232-4cb3-9d6a-f8797c859c83	chan-02	sample-cell001	5.68	square pulse	45	uA

+ 2 - 0
toy-dataset_patchclamp_multiple-records-per-file/sub-20220101A/sub-20220101A_scans.tsv

@@ -0,0 +1,2 @@
+filename	acq_time
+ephys/sub-20220101A_ephys.nwb	2022-01-01T10:00:00

+ 2 - 2
toy-dataset_patchclamp_multiple-records-per-file/sub-20220101B/ephys/sub-20220101B_ephys.json

@@ -7,11 +7,11 @@
     "Maintainer": "Charly C",
     "SoftwareFilters": {
       "LP_filter_1":{
-        "Half amplitude wutoff(Hz)": 0.0159,
+        "Half amplitude cutoff(Hz)": 0.0159,
         "Roll-off":"6dB/Octave"
       },
       "LP_filter_2":{
-        "Half amplitude wutoff(Hz)": 0.1159,
+        "Half amplitude cutoff(Hz)": 0.1159,
          "Roll-off":"9 dB/Octave"
       }
     }

+ 0 - 1
toy-dataset_patchclamp_multiple-records-per-file/sub-20220101B/ephys/sub-20220101B_probes.tsv

@@ -1,4 +1,3 @@
 probe_id	type	x	y	z	xyz_position_unit	coordinate_space	coordinate_reference_point	contact_count	height	dimension_unit
 probe-0236	pipette	2	4	1	um	sample	cortical surface	1	5	cm
 probe-0237	pipette	2	4	0	um	sample	cortical surface	1	5	cm
-

+ 2 - 0
toy-dataset_patchclamp_multiple-records-per-file/sub-20220101B/sub-20220101B_scans.tsv

@@ -0,0 +1,2 @@
+filename	acq_time
+ephys/sub-20220101B_ephys.nwb	2022-01-01T15:00:00

+ 2 - 2
toy-dataset_patchclamp_single-record-per-file/sub-20220101A/ephys/sub-20220101A_ephys.json

@@ -7,11 +7,11 @@
     "Maintainer": "Charly C",
     "SoftwareFilters": {
       "LP_filter_1":{
-        "Half amplitude wutoff(Hz)": 0.0159,
+        "Half amplitude cutoff(Hz)": 0.0159,
         "Roll-off":"6dB/Octave"
       },
       "LP_filter_2":{
-        "Half amplitude wutoff(Hz)": 0.1159,
+        "Half amplitude cutoff(Hz)": 0.1159,
          "Roll-off":"9 dB/Octave"
       }
     }

+ 3 - 3
toy-dataset_patchclamp_single-record-per-file/sub-20220101A/ephys/sub-20220101A_sample-cell001_run-1_events.tsv

@@ -1,3 +1,3 @@
-onset	duration	trial_type	response_time	stim_type	stim_unit	stim_amplitude
-1.23	0.65	start	1.435	square pulse	1	mV
-5.65	0.65	stop	1.739	square pulse	5	mV
+onset	duration	trial_type	channel_id	response_time	stim_type	stim_unit	stim_amplitude
+1.23	0.65	start	chan-01	1.435	square pulse	1	mV
+5.65	0.65	stop	chan-02	1.739	square pulse	5	mV

+ 3 - 3
toy-dataset_patchclamp_single-record-per-file/sub-20220101A/ephys/sub-20220101A_sample-cell001_run-2_events.tsv

@@ -1,3 +1,3 @@
-onset	duration	trial_type	response_time	stim_type	stim_unit	stim_amplitude
-6.21	0.65	start	2.43	square pulse	10	uA
-15.65	0.65	stop	5.68	square pulse	45	uA
+onset	duration	trial_type	channel_id	response_time	stim_type	stim_unit	stim_amplitude
+0.21	0.65	start	chan-01	2.43	square pulse	10	uA
+9.65	0.65	stop	chan-02	5.68	square pulse	45	uA

+ 1 - 1
toy-dataset_patchclamp_single-record-per-file/sub-20220101A/sub-20220101A_scans.tsv

@@ -1,3 +1,3 @@
 filename	acq_time
 ephys/sub-20220101A_sample-cell001_run-1_ephys.nwb	2022-01-01T10:00:00
-ephys/sub-20220101A_sample-cell001_run-2_ephys.nwb	2022-01-01T11:15:00
+ephys/sub-20220101A_sample-cell001_run-2_ephys.nwb	2022-01-01T10:06:00

+ 0 - 4
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_contacts.tsv

@@ -1,4 +0,0 @@
-contact_id	probe_id	x	y	z	physical_unit	impedance	impedance_unit	contact_size	contact_shape	material	location	pipette_solution	internal_pipette_diameter	external_pipette_diameter
-con-01	probe-0236	0	0	0	um	5	GOhm	3	circular	glass	cortical layer 3	7% NaCl	2.5	4
-con-02	probe-0237	0	0	0	um	4.5	GOhm	2.8	circular	glass	cortical layer 3	8% NaCl	2.2	3.5
-con-03	probe-0238	0	0	0	um	5.5	GOhm	3.1	circular	glass	cortical layer 3	9% NaCl	2.8	4.4

+ 2 - 2
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_ephys.json

@@ -7,11 +7,11 @@
     "Maintainer": "Charly C",
     "SoftwareFilters": {
       "LP_filter_1":{
-        "Half amplitude wutoff(Hz)": 0.0159,
+        "Half amplitude cutoff(Hz)": 0.0159,
         "Roll-off":"6dB/Octave"
       },
       "LP_filter_2":{
-        "Half amplitude wutoff(Hz)": 0.1159,
+        "Half amplitude cutoff(Hz)": 0.1159,
          "Roll-off":"9 dB/Octave"
       }
     }

+ 1 - 1
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell002_contacts.tsv

@@ -1,2 +1,2 @@
 contact_id	probe_id	x	y	z	physical_unit	impedance	impedance_unit	contact_size	contact_shape	material	location	pipette_solution	internal_pipette_diameter	external_pipette_diameter
-con-01	probe-0236	0	0	0	um	5	GOhm	3	circular	glass	cortical layer 3	7% NaCl	2	4
+con-01	probe-0236	0	0	0	um	5	GOhm	3	circular	glass	cortical layer 3	7% NaCl	2.5	4

+ 3 - 3
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell002_events.tsv

@@ -1,3 +1,3 @@
-onset	duration	trial_type	data_identity_id	channel_id	response_time	stim_type	stim_unit	stim_amplitude
-5	4	start	d7614bcb-8f7d-43e6-879e-877bf227687c	chan-01		2.5	square pulse	3	mV
-10	4	stop	0d6df00b-70c9-4785-bf0c-71a7acf39974	chan-01		2.5	square pulse	3	mV
+onset	duration	trial_type	channel_id	response_time	stim_type	stim_unit	stim_amplitude
+5	4	start	chan-01	2.5	square pulse	3	mV
+10	4	stop	chan-01	2.5	square pulse	3	mV

+ 1 - 1
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell003_channels.tsv

@@ -1,2 +1,2 @@
 channel_id	contact_id	gain	type	unit	samping_frequency	sampling_frequency_unit	channel_name	hardware_filters	recording_mode
-chan-02	con-02	50	WCP	mV	30000	Hz	whole cell patch	LP_filter_2	current clamp
+chan-02	con-02	15	CAT	mV	30000	Hz	cell attached patch	LP_filter_2	current clamp

+ 1 - 1
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell003_contacts.tsv

@@ -1,2 +1,2 @@
 contact_id	probe_id	x	y	z	physical_unit	impedance	impedance_unit	contact_size	contact_shape	material	location	pipette_solution	internal_pipette_diameter	external_pipette_diameter
-con-02	probe-0237	0	0	0	um	3	GOhm	4	circular	glass	cortical layer 3	3% NaCl	2	4
+con-02	probe-0237	0	0	0	um	4.5	GOhm	2.8	circular	glass	cortical layer 3	8% NaCl	2.2	3.5

+ 3 - 3
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/ephys/sub-20220101B_sample-cell003_events.tsv

@@ -1,3 +1,3 @@
-onset	duration	trial_type	data_identity_id	channel_id	response_time	stim_type	stim_unit	stim_amplitude	
-15	4	start	025c20fc-05e6-401a-9620-95b5e9c9b4bc	chan-02		3	square	pulse	3.3	mV
-20	4	stop	1fad915b-c2c6-46aa-9755-a7454805f6fc	chan-02		3	square	pulse	3.3	mV
+onset	duration	trial_type	channel_id	response_time	stim_type	stim_unit	stim_amplitude	
+0	4	start	chan-02	3	square	pulse	3.3	mV
+5	4	stop	chan-02	3	square	pulse	3.3	mV

+ 1 - 1
toy-dataset_patchclamp_single-record-per-file/sub-20220101B/sub-20220101B_scans.tsv

@@ -1,3 +1,3 @@
 filename	acq_time
 ephys/sub-20220101B_sample-cell002_ephys.nwb	2022-01-01T15:00:00
-ephys/sub-20220101B_sample-cell003_ephys.nwb	2022-01-01T16:30:00
+ephys/sub-20220101B_sample-cell003_ephys.nwb	2022-01-01T15:15:00