report_log.html 48 KB

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  1. <HTML><HEAD>
  2. <!--refreshstart-->
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  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
  5. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
  6. <h2>Progress Report / Log</h2>
  7. Started at Tue Mar 22 21:13:29 CET 2016<p>
  8. <pre>
  9. cp -r ../.files .files
  10. </pre><hr>Higher-level stats<br><pre>
  11. cat ../design.lcon | awk '{ print }' > design.lcon
  12. /usr/share/fsl/5.0/bin/fslsplit mask tmpmask -z
  13. /usr/share/fsl/5.0/bin/fslsplit filtered_func_data tmpcope -z
  14. /usr/share/fsl/5.0/bin/fslsplit var_filtered_func_data tmpvarcope -z
  15. /usr/share/fsl/5.0/bin/flameo --cope=tmpcope0000 --vc=tmpvarcope0000 --mask=tmpmask0000 --ld=stats0000 --dm=design.mat --cs=design.grp --tc=design.con --io --runmode=flame1
  16. Log directory is: stats0000
  17. Setting up:
  18. ntptsing=4.000000
  19. evs_group=1.000000
  20. No f contrasts
  21. WARNING: The passed in varcope file, tmpvarcope0000, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  22. nevs=1
  23. ntpts=4
  24. ngs=1
  25. nvoxels=194
  26. Running:
  27. nmaskvoxels=194
  28. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  29. nmaskvoxels=194
  30. Saving results
  31. Log directory was: stats0000
  32. Log directory is: stats0009
  33. Setting up:
  34. ntptsing=4.000000
  35. evs_group=1.000000
  36. No f contrasts
  37. WARNING: The passed in varcope file, tmpvarcope0009, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  38. nevs=1
  39. ntpts=4
  40. ngs=1
  41. nvoxels=2918
  42. Running:
  43. nmaskvoxels=2918
  44. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  45. nmaskvoxels=2918
  46. Saving results
  47. Log directory was: stats0009
  48. Log directory is: stats0010
  49. Setting up:
  50. ntptsing=4.000000
  51. evs_group=1.000000
  52. No f contrasts
  53. WARNING: The passed in varcope file, tmpvarcope0010, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  54. nevs=1
  55. ntpts=4
  56. ngs=1
  57. nvoxels=3072
  58. Running:
  59. nmaskvoxels=3072
  60. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  61. nmaskvoxels=3072
  62. Saving results
  63. Log directory was: stats0010
  64. Log directory is: stats0011
  65. Setting up:
  66. ntptsing=4.000000
  67. evs_group=1.000000
  68. No f contrasts
  69. WARNING: The passed in varcope file, tmpvarcope0011, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  70. nevs=1
  71. ntpts=4
  72. ngs=1
  73. nvoxels=3213
  74. Running:
  75. nmaskvoxels=3213
  76. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  77. nmaskvoxels=3213
  78. Saving results
  79. Log directory was: stats0011
  80. Log directory is: stats0012
  81. Setting up:
  82. ntptsing=4.000000
  83. evs_group=1.000000
  84. No f contrasts
  85. WARNING: The passed in varcope file, tmpvarcope0012, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  86. nevs=1
  87. ntpts=4
  88. ngs=1
  89. nvoxels=3336
  90. Running:
  91. nmaskvoxels=3336
  92. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  93. nmaskvoxels=3336
  94. Saving results
  95. Log directory was: stats0012
  96. Log directory is: stats0013
  97. Setting up:
  98. ntptsing=4.000000
  99. evs_group=1.000000
  100. No f contrasts
  101. WARNING: The passed in varcope file, tmpvarcope0013, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  102. nevs=1
  103. ntpts=4
  104. ngs=1
  105. nvoxels=3415
  106. Running:
  107. nmaskvoxels=3415
  108. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  109. nmaskvoxels=3415
  110. Saving results
  111. Log directory was: stats0013
  112. Log directory is: stats0014
  113. Setting up:
  114. ntptsing=4.000000
  115. evs_group=1.000000
  116. No f contrasts
  117. WARNING: The passed in varcope file, tmpvarcope0014, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  118. nevs=1
  119. ntpts=4
  120. ngs=1
  121. nvoxels=3466
  122. Running:
  123. nmaskvoxels=3466
  124. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  125. nmaskvoxels=3466
  126. Saving results
  127. Log directory was: stats0014
  128. Log directory is: stats0015
  129. Setting up:
  130. ntptsing=4.000000
  131. evs_group=1.000000
  132. No f contrasts
  133. WARNING: The passed in varcope file, tmpvarcope0015, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  134. nevs=1
  135. ntpts=4
  136. ngs=1
  137. nvoxels=3487
  138. Running:
  139. nmaskvoxels=3487
  140. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  141. nmaskvoxels=3487
  142. Saving results
  143. Log directory was: stats0015
  144. Log directory is: stats0016
  145. Setting up:
  146. ntptsing=4.000000
  147. evs_group=1.000000
  148. No f contrasts
  149. WARNING: The passed in varcope file, tmpvarcope0016, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  150. nevs=1
  151. ntpts=4
  152. ngs=1
  153. nvoxels=3520
  154. Running:
  155. nmaskvoxels=3520
  156. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  157. nmaskvoxels=3520
  158. Saving results
  159. Log directory was: stats0016
  160. Log directory is: stats0017
  161. Setting up:
  162. ntptsing=4.000000
  163. evs_group=1.000000
  164. No f contrasts
  165. WARNING: The passed in varcope file, tmpvarcope0017, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  166. nevs=1
  167. ntpts=4
  168. ngs=1
  169. nvoxels=3540
  170. Running:
  171. nmaskvoxels=3540
  172. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  173. nmaskvoxels=3540
  174. Saving results
  175. Log directory was: stats0017
  176. Log directory is: stats0018
  177. Setting up:
  178. ntptsing=4.000000
  179. evs_group=1.000000
  180. No f contrasts
  181. WARNING: The passed in varcope file, tmpvarcope0018, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  182. nevs=1
  183. ntpts=4
  184. ngs=1
  185. nvoxels=3529
  186. Running:
  187. nmaskvoxels=3529
  188. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  189. nmaskvoxels=3529
  190. Saving results
  191. Log directory was: stats0018
  192. Log directory is: stats0001
  193. Setting up:
  194. ntptsing=4.000000
  195. evs_group=1.000000
  196. No f contrasts
  197. WARNING: The passed in varcope file, tmpvarcope0001, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  198. nevs=1
  199. ntpts=4
  200. ngs=1
  201. nvoxels=1809
  202. Running:
  203. nmaskvoxels=1809
  204. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  205. nmaskvoxels=1809
  206. Saving results
  207. Log directory was: stats0001
  208. Log directory is: stats0019
  209. Setting up:
  210. ntptsing=4.000000
  211. evs_group=1.000000
  212. No f contrasts
  213. WARNING: The passed in varcope file, tmpvarcope0019, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  214. nevs=1
  215. ntpts=4
  216. ngs=1
  217. nvoxels=3516
  218. Running:
  219. nmaskvoxels=3516
  220. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  221. nmaskvoxels=3516
  222. Saving results
  223. Log directory was: stats0019
  224. Log directory is: stats0020
  225. Setting up:
  226. ntptsing=4.000000
  227. evs_group=1.000000
  228. No f contrasts
  229. WARNING: The passed in varcope file, tmpvarcope0020, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  230. nevs=1
  231. ntpts=4
  232. ngs=1
  233. nvoxels=3491
  234. Running:
  235. nmaskvoxels=3491
  236. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  237. nmaskvoxels=3491
  238. Saving results
  239. Log directory was: stats0020
  240. Log directory is: stats0021
  241. Setting up:
  242. ntptsing=4.000000
  243. evs_group=1.000000
  244. No f contrasts
  245. WARNING: The passed in varcope file, tmpvarcope0021, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  246. nevs=1
  247. ntpts=4
  248. ngs=1
  249. nvoxels=3475
  250. Running:
  251. nmaskvoxels=3475
  252. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  253. nmaskvoxels=3475
  254. Saving results
  255. Log directory was: stats0021
  256. Log directory is: stats0022
  257. Setting up:
  258. ntptsing=4.000000
  259. evs_group=1.000000
  260. No f contrasts
  261. WARNING: The passed in varcope file, tmpvarcope0022, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  262. nevs=1
  263. ntpts=4
  264. ngs=1
  265. nvoxels=3435
  266. Running:
  267. nmaskvoxels=3435
  268. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  269. nmaskvoxels=3435
  270. Saving results
  271. Log directory was: stats0022
  272. Log directory is: stats0023
  273. Setting up:
  274. ntptsing=4.000000
  275. evs_group=1.000000
  276. No f contrasts
  277. WARNING: The passed in varcope file, tmpvarcope0023, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  278. nevs=1
  279. ntpts=4
  280. ngs=1
  281. nvoxels=3406
  282. Running:
  283. nmaskvoxels=3406
  284. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  285. nmaskvoxels=3406
  286. Saving results
  287. Log directory was: stats0023
  288. Log directory is: stats0024
  289. Setting up:
  290. ntptsing=4.000000
  291. evs_group=1.000000
  292. No f contrasts
  293. WARNING: The passed in varcope file, tmpvarcope0024, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  294. nevs=1
  295. ntpts=4
  296. ngs=1
  297. nvoxels=3350
  298. Running:
  299. nmaskvoxels=3350
  300. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  301. nmaskvoxels=3350
  302. Saving results
  303. Log directory was: stats0024
  304. Log directory is: stats0025
  305. Setting up:
  306. ntptsing=4.000000
  307. evs_group=1.000000
  308. No f contrasts
  309. WARNING: The passed in varcope file, tmpvarcope0025, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  310. nevs=1
  311. ntpts=4
  312. ngs=1
  313. nvoxels=3293
  314. Running:
  315. nmaskvoxels=3293
  316. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  317. nmaskvoxels=3293
  318. Saving results
  319. Log directory was: stats0025
  320. Log directory is: stats0026
  321. Setting up:
  322. ntptsing=4.000000
  323. evs_group=1.000000
  324. No f contrasts
  325. WARNING: The passed in varcope file, tmpvarcope0026, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  326. nevs=1
  327. ntpts=4
  328. ngs=1
  329. nvoxels=3183
  330. Running:
  331. nmaskvoxels=3183
  332. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  333. nmaskvoxels=3183
  334. Saving results
  335. Log directory was: stats0026
  336. Log directory is: stats0027
  337. Setting up:
  338. ntptsing=4.000000
  339. evs_group=1.000000
  340. No f contrasts
  341. WARNING: The passed in varcope file, tmpvarcope0027, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  342. nevs=1
  343. ntpts=4
  344. ngs=1
  345. nvoxels=3088
  346. Running:
  347. nmaskvoxels=3088
  348. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  349. nmaskvoxels=3088
  350. Saving results
  351. Log directory was: stats0027
  352. Log directory is: stats0028
  353. Setting up:
  354. ntptsing=4.000000
  355. evs_group=1.000000
  356. No f contrasts
  357. WARNING: The passed in varcope file, tmpvarcope0028, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  358. nevs=1
  359. ntpts=4
  360. ngs=1
  361. nvoxels=3004
  362. Running:
  363. nmaskvoxels=3004
  364. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  365. nmaskvoxels=3004
  366. Saving results
  367. Log directory was: stats0028
  368. Log directory is: stats0002
  369. Setting up:
  370. ntptsing=4.000000
  371. evs_group=1.000000
  372. No f contrasts
  373. WARNING: The passed in varcope file, tmpvarcope0002, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  374. nevs=1
  375. ntpts=4
  376. ngs=1
  377. nvoxels=2021
  378. Running:
  379. nmaskvoxels=2021
  380. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  381. nmaskvoxels=2021
  382. Saving results
  383. Log directory was: stats0002
  384. Log directory is: stats0029
  385. Setting up:
  386. ntptsing=4.000000
  387. evs_group=1.000000
  388. No f contrasts
  389. WARNING: The passed in varcope file, tmpvarcope0029, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  390. nevs=1
  391. ntpts=4
  392. ngs=1
  393. nvoxels=2893
  394. Running:
  395. nmaskvoxels=2893
  396. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  397. nmaskvoxels=2893
  398. Saving results
  399. Log directory was: stats0029
  400. Log directory is: stats0030
  401. Setting up:
  402. ntptsing=4.000000
  403. evs_group=1.000000
  404. No f contrasts
  405. WARNING: The passed in varcope file, tmpvarcope0030, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  406. nevs=1
  407. ntpts=4
  408. ngs=1
  409. nvoxels=2777
  410. Running:
  411. nmaskvoxels=2777
  412. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  413. nmaskvoxels=2777
  414. Saving results
  415. Log directory was: stats0030
  416. Log directory is: stats0031
  417. Setting up:
  418. ntptsing=4.000000
  419. evs_group=1.000000
  420. No f contrasts
  421. WARNING: The passed in varcope file, tmpvarcope0031, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  422. nevs=1
  423. ntpts=4
  424. ngs=1
  425. nvoxels=2636
  426. Running:
  427. nmaskvoxels=2636
  428. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  429. nmaskvoxels=2636
  430. Saving results
  431. Log directory was: stats0031
  432. Log directory is: stats0032
  433. Setting up:
  434. ntptsing=4.000000
  435. evs_group=1.000000
  436. No f contrasts
  437. WARNING: The passed in varcope file, tmpvarcope0032, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  438. nevs=1
  439. ntpts=4
  440. ngs=1
  441. nvoxels=2501
  442. Running:
  443. nmaskvoxels=2501
  444. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  445. nmaskvoxels=2501
  446. Saving results
  447. Log directory was: stats0032
  448. Log directory is: stats0033
  449. Setting up:
  450. ntptsing=4.000000
  451. evs_group=1.000000
  452. No f contrasts
  453. WARNING: The passed in varcope file, tmpvarcope0033, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  454. nevs=1
  455. ntpts=4
  456. ngs=1
  457. nvoxels=2353
  458. Running:
  459. nmaskvoxels=2353
  460. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  461. nmaskvoxels=2353
  462. Saving results
  463. Log directory was: stats0033
  464. Log directory is: stats0034
  465. Setting up:
  466. ntptsing=4.000000
  467. evs_group=1.000000
  468. No f contrasts
  469. WARNING: The passed in varcope file, tmpvarcope0034, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  470. nevs=1
  471. ntpts=4
  472. ngs=1
  473. nvoxels=2184
  474. Running:
  475. nmaskvoxels=2184
  476. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  477. nmaskvoxels=2184
  478. Saving results
  479. Log directory was: stats0034
  480. Log directory is: stats0035
  481. Setting up:
  482. ntptsing=4.000000
  483. evs_group=1.000000
  484. No f contrasts
  485. WARNING: The passed in varcope file, tmpvarcope0035, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  486. nevs=1
  487. ntpts=4
  488. ngs=1
  489. nvoxels=2027
  490. Running:
  491. nmaskvoxels=2027
  492. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  493. nmaskvoxels=2027
  494. Saving results
  495. Log directory was: stats0035
  496. Log directory is: stats0036
  497. Setting up:
  498. ntptsing=4.000000
  499. evs_group=1.000000
  500. No f contrasts
  501. WARNING: The passed in varcope file, tmpvarcope0036, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  502. nevs=1
  503. ntpts=4
  504. ngs=1
  505. nvoxels=1878
  506. Running:
  507. nmaskvoxels=1878
  508. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  509. nmaskvoxels=1878
  510. Saving results
  511. Log directory was: stats0036
  512. Log directory is: stats0037
  513. Setting up:
  514. ntptsing=4.000000
  515. evs_group=1.000000
  516. No f contrasts
  517. WARNING: The passed in varcope file, tmpvarcope0037, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  518. nevs=1
  519. ntpts=4
  520. ngs=1
  521. nvoxels=1712
  522. Running:
  523. nmaskvoxels=1712
  524. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  525. nmaskvoxels=1712
  526. Saving results
  527. Log directory was: stats0037
  528. Log directory is: stats0038
  529. Setting up:
  530. ntptsing=4.000000
  531. evs_group=1.000000
  532. No f contrasts
  533. WARNING: The passed in varcope file, tmpvarcope0038, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  534. nevs=1
  535. ntpts=4
  536. ngs=1
  537. nvoxels=1540
  538. Running:
  539. nmaskvoxels=1540
  540. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  541. nmaskvoxels=1540
  542. Saving results
  543. Log directory was: stats0038
  544. Log directory is: stats0003
  545. Setting up:
  546. ntptsing=4.000000
  547. evs_group=1.000000
  548. No f contrasts
  549. WARNING: The passed in varcope file, tmpvarcope0003, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  550. nevs=1
  551. ntpts=4
  552. ngs=1
  553. nvoxels=2254
  554. Running:
  555. nmaskvoxels=2254
  556. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  557. nmaskvoxels=2254
  558. Saving results
  559. Log directory was: stats0003
  560. Log directory is: stats0039
  561. Setting up:
  562. ntptsing=4.000000
  563. evs_group=1.000000
  564. No f contrasts
  565. WARNING: The passed in varcope file, tmpvarcope0039, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  566. nevs=1
  567. ntpts=4
  568. ngs=1
  569. nvoxels=1369
  570. Running:
  571. nmaskvoxels=1369
  572. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  573. nmaskvoxels=1369
  574. Saving results
  575. Log directory was: stats0039
  576. Log directory is: stats0040
  577. Setting up:
  578. ntptsing=4.000000
  579. evs_group=1.000000
  580. No f contrasts
  581. WARNING: The passed in varcope file, tmpvarcope0040, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  582. nevs=1
  583. ntpts=4
  584. ngs=1
  585. nvoxels=1178
  586. Running:
  587. nmaskvoxels=1178
  588. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  589. nmaskvoxels=1178
  590. Saving results
  591. Log directory was: stats0040
  592. Log directory is: stats0041
  593. Setting up:
  594. ntptsing=4.000000
  595. evs_group=1.000000
  596. No f contrasts
  597. WARNING: The passed in varcope file, tmpvarcope0041, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  598. nevs=1
  599. ntpts=4
  600. ngs=1
  601. nvoxels=996
  602. Running:
  603. nmaskvoxels=996
  604. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  605. nmaskvoxels=996
  606. Saving results
  607. Log directory was: stats0041
  608. Log directory is: stats0042
  609. Setting up:
  610. ntptsing=4.000000
  611. evs_group=1.000000
  612. No f contrasts
  613. WARNING: The passed in varcope file, tmpvarcope0042, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  614. nevs=1
  615. ntpts=4
  616. ngs=1
  617. nvoxels=808
  618. Running:
  619. nmaskvoxels=808
  620. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  621. nmaskvoxels=808
  622. Saving results
  623. Log directory was: stats0042
  624. Log directory is: stats0043
  625. Setting up:
  626. ntptsing=4.000000
  627. evs_group=1.000000
  628. No f contrasts
  629. WARNING: The passed in varcope file, tmpvarcope0043, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  630. nevs=1
  631. ntpts=4
  632. ngs=1
  633. nvoxels=602
  634. Running:
  635. nmaskvoxels=602
  636. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  637. nmaskvoxels=602
  638. Saving results
  639. Log directory was: stats0043
  640. Log directory is: stats0044
  641. Setting up:
  642. ntptsing=4.000000
  643. evs_group=1.000000
  644. No f contrasts
  645. WARNING: The passed in varcope file, tmpvarcope0044, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  646. nevs=1
  647. ntpts=4
  648. ngs=1
  649. nvoxels=396
  650. Running:
  651. nmaskvoxels=396
  652. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  653. nmaskvoxels=396
  654. Saving results
  655. Log directory was: stats0044
  656. Log directory is: stats0004
  657. Setting up:
  658. ntptsing=4.000000
  659. evs_group=1.000000
  660. No f contrasts
  661. WARNING: The passed in varcope file, tmpvarcope0004, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  662. nevs=1
  663. ntpts=4
  664. ngs=1
  665. nvoxels=2399
  666. Running:
  667. nmaskvoxels=2399
  668. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  669. nmaskvoxels=2399
  670. Saving results
  671. Log directory was: stats0004
  672. Log directory is: stats0005
  673. Setting up:
  674. ntptsing=4.000000
  675. evs_group=1.000000
  676. No f contrasts
  677. WARNING: The passed in varcope file, tmpvarcope0005, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  678. nevs=1
  679. ntpts=4
  680. ngs=1
  681. nvoxels=2530
  682. Running:
  683. nmaskvoxels=2530
  684. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  685. nmaskvoxels=2530
  686. Saving results
  687. Log directory was: stats0005
  688. Log directory is: stats0006
  689. Setting up:
  690. ntptsing=4.000000
  691. evs_group=1.000000
  692. No f contrasts
  693. WARNING: The passed in varcope file, tmpvarcope0006, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  694. nevs=1
  695. ntpts=4
  696. ngs=1
  697. nvoxels=2625
  698. Running:
  699. nmaskvoxels=2625
  700. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  701. nmaskvoxels=2625
  702. Saving results
  703. Log directory was: stats0006
  704. Log directory is: stats0007
  705. Setting up:
  706. ntptsing=4.000000
  707. evs_group=1.000000
  708. No f contrasts
  709. WARNING: The passed in varcope file, tmpvarcope0007, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  710. nevs=1
  711. ntpts=4
  712. ngs=1
  713. nvoxels=2715
  714. Running:
  715. nmaskvoxels=2715
  716. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  717. nmaskvoxels=2715
  718. Saving results
  719. Log directory was: stats0007
  720. Log directory is: stats0008
  721. Setting up:
  722. ntptsing=4.000000
  723. evs_group=1.000000
  724. No f contrasts
  725. WARNING: The passed in varcope file, tmpvarcope0008, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  726. nevs=1
  727. ntpts=4
  728. ngs=1
  729. nvoxels=2801
  730. Running:
  731. nmaskvoxels=2801
  732. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  733. nmaskvoxels=2801
  734. Saving results
  735. Log directory was: stats0008
  736. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/cope1.nii.gz stats0000/cope1 stats0001/cope1 stats0002/cope1 stats0003/cope1 stats0004/cope1 stats0005/cope1 stats0006/cope1 stats0007/cope1 stats0008/cope1 stats0009/cope1 stats0010/cope1 stats0011/cope1 stats0012/cope1 stats0013/cope1 stats0014/cope1 stats0015/cope1 stats0016/cope1 stats0017/cope1 stats0018/cope1 stats0019/cope1 stats0020/cope1 stats0021/cope1 stats0022/cope1 stats0023/cope1 stats0024/cope1 stats0025/cope1 stats0026/cope1 stats0027/cope1 stats0028/cope1 stats0029/cope1 stats0030/cope1 stats0031/cope1 stats0032/cope1 stats0033/cope1 stats0034/cope1 stats0035/cope1 stats0036/cope1 stats0037/cope1 stats0038/cope1 stats0039/cope1 stats0040/cope1 stats0041/cope1 stats0042/cope1 stats0043/cope1 stats0044/cope1
  737. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/global_prob_outlier1.nii.gz stats0000/global_prob_outlier1 stats0001/global_prob_outlier1 stats0002/global_prob_outlier1 stats0003/global_prob_outlier1 stats0004/global_prob_outlier1 stats0005/global_prob_outlier1 stats0006/global_prob_outlier1 stats0007/global_prob_outlier1 stats0008/global_prob_outlier1 stats0009/global_prob_outlier1 stats0010/global_prob_outlier1 stats0011/global_prob_outlier1 stats0012/global_prob_outlier1 stats0013/global_prob_outlier1 stats0014/global_prob_outlier1 stats0015/global_prob_outlier1 stats0016/global_prob_outlier1 stats0017/global_prob_outlier1 stats0018/global_prob_outlier1 stats0019/global_prob_outlier1 stats0020/global_prob_outlier1 stats0021/global_prob_outlier1 stats0022/global_prob_outlier1 stats0023/global_prob_outlier1 stats0024/global_prob_outlier1 stats0025/global_prob_outlier1 stats0026/global_prob_outlier1 stats0027/global_prob_outlier1 stats0028/global_prob_outlier1 stats0029/global_prob_outlier1 stats0030/global_prob_outlier1 stats0031/global_prob_outlier1 stats0032/global_prob_outlier1 stats0033/global_prob_outlier1 stats0034/global_prob_outlier1 stats0035/global_prob_outlier1 stats0036/global_prob_outlier1 stats0037/global_prob_outlier1 stats0038/global_prob_outlier1 stats0039/global_prob_outlier1 stats0040/global_prob_outlier1 stats0041/global_prob_outlier1 stats0042/global_prob_outlier1 stats0043/global_prob_outlier1 stats0044/global_prob_outlier1
  738. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/mask.nii.gz stats0000/mask stats0001/mask stats0002/mask stats0003/mask stats0004/mask stats0005/mask stats0006/mask stats0007/mask stats0008/mask stats0009/mask stats0010/mask stats0011/mask stats0012/mask stats0013/mask stats0014/mask stats0015/mask stats0016/mask stats0017/mask stats0018/mask stats0019/mask stats0020/mask stats0021/mask stats0022/mask stats0023/mask stats0024/mask stats0025/mask stats0026/mask stats0027/mask stats0028/mask stats0029/mask stats0030/mask stats0031/mask stats0032/mask stats0033/mask stats0034/mask stats0035/mask stats0036/mask stats0037/mask stats0038/mask stats0039/mask stats0040/mask stats0041/mask stats0042/mask stats0043/mask stats0044/mask
  739. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/mean_outlier_random_effects_var1.nii.gz stats0000/mean_outlier_random_effects_var1 stats0001/mean_outlier_random_effects_var1 stats0002/mean_outlier_random_effects_var1 stats0003/mean_outlier_random_effects_var1 stats0004/mean_outlier_random_effects_var1 stats0005/mean_outlier_random_effects_var1 stats0006/mean_outlier_random_effects_var1 stats0007/mean_outlier_random_effects_var1 stats0008/mean_outlier_random_effects_var1 stats0009/mean_outlier_random_effects_var1 stats0010/mean_outlier_random_effects_var1 stats0011/mean_outlier_random_effects_var1 stats0012/mean_outlier_random_effects_var1 stats0013/mean_outlier_random_effects_var1 stats0014/mean_outlier_random_effects_var1 stats0015/mean_outlier_random_effects_var1 stats0016/mean_outlier_random_effects_var1 stats0017/mean_outlier_random_effects_var1 stats0018/mean_outlier_random_effects_var1 stats0019/mean_outlier_random_effects_var1 stats0020/mean_outlier_random_effects_var1 stats0021/mean_outlier_random_effects_var1 stats0022/mean_outlier_random_effects_var1 stats0023/mean_outlier_random_effects_var1 stats0024/mean_outlier_random_effects_var1 stats0025/mean_outlier_random_effects_var1 stats0026/mean_outlier_random_effects_var1 stats0027/mean_outlier_random_effects_var1 stats0028/mean_outlier_random_effects_var1 stats0029/mean_outlier_random_effects_var1 stats0030/mean_outlier_random_effects_var1 stats0031/mean_outlier_random_effects_var1 stats0032/mean_outlier_random_effects_var1 stats0033/mean_outlier_random_effects_var1 stats0034/mean_outlier_random_effects_var1 stats0035/mean_outlier_random_effects_var1 stats0036/mean_outlier_random_effects_var1 stats0037/mean_outlier_random_effects_var1 stats0038/mean_outlier_random_effects_var1 stats0039/mean_outlier_random_effects_var1 stats0040/mean_outlier_random_effects_var1 stats0041/mean_outlier_random_effects_var1 stats0042/mean_outlier_random_effects_var1 stats0043/mean_outlier_random_effects_var1 stats0044/mean_outlier_random_effects_var1
  740. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/mean_random_effects_var1.nii.gz stats0000/mean_random_effects_var1 stats0001/mean_random_effects_var1 stats0002/mean_random_effects_var1 stats0003/mean_random_effects_var1 stats0004/mean_random_effects_var1 stats0005/mean_random_effects_var1 stats0006/mean_random_effects_var1 stats0007/mean_random_effects_var1 stats0008/mean_random_effects_var1 stats0009/mean_random_effects_var1 stats0010/mean_random_effects_var1 stats0011/mean_random_effects_var1 stats0012/mean_random_effects_var1 stats0013/mean_random_effects_var1 stats0014/mean_random_effects_var1 stats0015/mean_random_effects_var1 stats0016/mean_random_effects_var1 stats0017/mean_random_effects_var1 stats0018/mean_random_effects_var1 stats0019/mean_random_effects_var1 stats0020/mean_random_effects_var1 stats0021/mean_random_effects_var1 stats0022/mean_random_effects_var1 stats0023/mean_random_effects_var1 stats0024/mean_random_effects_var1 stats0025/mean_random_effects_var1 stats0026/mean_random_effects_var1 stats0027/mean_random_effects_var1 stats0028/mean_random_effects_var1 stats0029/mean_random_effects_var1 stats0030/mean_random_effects_var1 stats0031/mean_random_effects_var1 stats0032/mean_random_effects_var1 stats0033/mean_random_effects_var1 stats0034/mean_random_effects_var1 stats0035/mean_random_effects_var1 stats0036/mean_random_effects_var1 stats0037/mean_random_effects_var1 stats0038/mean_random_effects_var1 stats0039/mean_random_effects_var1 stats0040/mean_random_effects_var1 stats0041/mean_random_effects_var1 stats0042/mean_random_effects_var1 stats0043/mean_random_effects_var1 stats0044/mean_random_effects_var1
  741. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/pe1.nii.gz stats0000/pe1 stats0001/pe1 stats0002/pe1 stats0003/pe1 stats0004/pe1 stats0005/pe1 stats0006/pe1 stats0007/pe1 stats0008/pe1 stats0009/pe1 stats0010/pe1 stats0011/pe1 stats0012/pe1 stats0013/pe1 stats0014/pe1 stats0015/pe1 stats0016/pe1 stats0017/pe1 stats0018/pe1 stats0019/pe1 stats0020/pe1 stats0021/pe1 stats0022/pe1 stats0023/pe1 stats0024/pe1 stats0025/pe1 stats0026/pe1 stats0027/pe1 stats0028/pe1 stats0029/pe1 stats0030/pe1 stats0031/pe1 stats0032/pe1 stats0033/pe1 stats0034/pe1 stats0035/pe1 stats0036/pe1 stats0037/pe1 stats0038/pe1 stats0039/pe1 stats0040/pe1 stats0041/pe1 stats0042/pe1 stats0043/pe1 stats0044/pe1
  742. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/prob_outlier1.nii.gz stats0000/prob_outlier1 stats0001/prob_outlier1 stats0002/prob_outlier1 stats0003/prob_outlier1 stats0004/prob_outlier1 stats0005/prob_outlier1 stats0006/prob_outlier1 stats0007/prob_outlier1 stats0008/prob_outlier1 stats0009/prob_outlier1 stats0010/prob_outlier1 stats0011/prob_outlier1 stats0012/prob_outlier1 stats0013/prob_outlier1 stats0014/prob_outlier1 stats0015/prob_outlier1 stats0016/prob_outlier1 stats0017/prob_outlier1 stats0018/prob_outlier1 stats0019/prob_outlier1 stats0020/prob_outlier1 stats0021/prob_outlier1 stats0022/prob_outlier1 stats0023/prob_outlier1 stats0024/prob_outlier1 stats0025/prob_outlier1 stats0026/prob_outlier1 stats0027/prob_outlier1 stats0028/prob_outlier1 stats0029/prob_outlier1 stats0030/prob_outlier1 stats0031/prob_outlier1 stats0032/prob_outlier1 stats0033/prob_outlier1 stats0034/prob_outlier1 stats0035/prob_outlier1 stats0036/prob_outlier1 stats0037/prob_outlier1 stats0038/prob_outlier1 stats0039/prob_outlier1 stats0040/prob_outlier1 stats0041/prob_outlier1 stats0042/prob_outlier1 stats0043/prob_outlier1 stats0044/prob_outlier1
  743. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/res4d.nii.gz stats0000/res4d stats0001/res4d stats0002/res4d stats0003/res4d stats0004/res4d stats0005/res4d stats0006/res4d stats0007/res4d stats0008/res4d stats0009/res4d stats0010/res4d stats0011/res4d stats0012/res4d stats0013/res4d stats0014/res4d stats0015/res4d stats0016/res4d stats0017/res4d stats0018/res4d stats0019/res4d stats0020/res4d stats0021/res4d stats0022/res4d stats0023/res4d stats0024/res4d stats0025/res4d stats0026/res4d stats0027/res4d stats0028/res4d stats0029/res4d stats0030/res4d stats0031/res4d stats0032/res4d stats0033/res4d stats0034/res4d stats0035/res4d stats0036/res4d stats0037/res4d stats0038/res4d stats0039/res4d stats0040/res4d stats0041/res4d stats0042/res4d stats0043/res4d stats0044/res4d
  744. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/tdof_t1.nii.gz stats0000/tdof_t1 stats0001/tdof_t1 stats0002/tdof_t1 stats0003/tdof_t1 stats0004/tdof_t1 stats0005/tdof_t1 stats0006/tdof_t1 stats0007/tdof_t1 stats0008/tdof_t1 stats0009/tdof_t1 stats0010/tdof_t1 stats0011/tdof_t1 stats0012/tdof_t1 stats0013/tdof_t1 stats0014/tdof_t1 stats0015/tdof_t1 stats0016/tdof_t1 stats0017/tdof_t1 stats0018/tdof_t1 stats0019/tdof_t1 stats0020/tdof_t1 stats0021/tdof_t1 stats0022/tdof_t1 stats0023/tdof_t1 stats0024/tdof_t1 stats0025/tdof_t1 stats0026/tdof_t1 stats0027/tdof_t1 stats0028/tdof_t1 stats0029/tdof_t1 stats0030/tdof_t1 stats0031/tdof_t1 stats0032/tdof_t1 stats0033/tdof_t1 stats0034/tdof_t1 stats0035/tdof_t1 stats0036/tdof_t1 stats0037/tdof_t1 stats0038/tdof_t1 stats0039/tdof_t1 stats0040/tdof_t1 stats0041/tdof_t1 stats0042/tdof_t1 stats0043/tdof_t1 stats0044/tdof_t1
  745. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/tstat1.nii.gz stats0000/tstat1 stats0001/tstat1 stats0002/tstat1 stats0003/tstat1 stats0004/tstat1 stats0005/tstat1 stats0006/tstat1 stats0007/tstat1 stats0008/tstat1 stats0009/tstat1 stats0010/tstat1 stats0011/tstat1 stats0012/tstat1 stats0013/tstat1 stats0014/tstat1 stats0015/tstat1 stats0016/tstat1 stats0017/tstat1 stats0018/tstat1 stats0019/tstat1 stats0020/tstat1 stats0021/tstat1 stats0022/tstat1 stats0023/tstat1 stats0024/tstat1 stats0025/tstat1 stats0026/tstat1 stats0027/tstat1 stats0028/tstat1 stats0029/tstat1 stats0030/tstat1 stats0031/tstat1 stats0032/tstat1 stats0033/tstat1 stats0034/tstat1 stats0035/tstat1 stats0036/tstat1 stats0037/tstat1 stats0038/tstat1 stats0039/tstat1 stats0040/tstat1 stats0041/tstat1 stats0042/tstat1 stats0043/tstat1 stats0044/tstat1
  746. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/varcope1.nii.gz stats0000/varcope1 stats0001/varcope1 stats0002/varcope1 stats0003/varcope1 stats0004/varcope1 stats0005/varcope1 stats0006/varcope1 stats0007/varcope1 stats0008/varcope1 stats0009/varcope1 stats0010/varcope1 stats0011/varcope1 stats0012/varcope1 stats0013/varcope1 stats0014/varcope1 stats0015/varcope1 stats0016/varcope1 stats0017/varcope1 stats0018/varcope1 stats0019/varcope1 stats0020/varcope1 stats0021/varcope1 stats0022/varcope1 stats0023/varcope1 stats0024/varcope1 stats0025/varcope1 stats0026/varcope1 stats0027/varcope1 stats0028/varcope1 stats0029/varcope1 stats0030/varcope1 stats0031/varcope1 stats0032/varcope1 stats0033/varcope1 stats0034/varcope1 stats0035/varcope1 stats0036/varcope1 stats0037/varcope1 stats0038/varcope1 stats0039/varcope1 stats0040/varcope1 stats0041/varcope1 stats0042/varcope1 stats0043/varcope1 stats0044/varcope1
  747. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/weights1.nii.gz stats0000/weights1 stats0001/weights1 stats0002/weights1 stats0003/weights1 stats0004/weights1 stats0005/weights1 stats0006/weights1 stats0007/weights1 stats0008/weights1 stats0009/weights1 stats0010/weights1 stats0011/weights1 stats0012/weights1 stats0013/weights1 stats0014/weights1 stats0015/weights1 stats0016/weights1 stats0017/weights1 stats0018/weights1 stats0019/weights1 stats0020/weights1 stats0021/weights1 stats0022/weights1 stats0023/weights1 stats0024/weights1 stats0025/weights1 stats0026/weights1 stats0027/weights1 stats0028/weights1 stats0029/weights1 stats0030/weights1 stats0031/weights1 stats0032/weights1 stats0033/weights1 stats0034/weights1 stats0035/weights1 stats0036/weights1 stats0037/weights1 stats0038/weights1 stats0039/weights1 stats0040/weights1 stats0041/weights1 stats0042/weights1 stats0043/weights1 stats0044/weights1
  748. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/zflame1lowertstat1.nii.gz stats0000/zflame1lowertstat1 stats0001/zflame1lowertstat1 stats0002/zflame1lowertstat1 stats0003/zflame1lowertstat1 stats0004/zflame1lowertstat1 stats0005/zflame1lowertstat1 stats0006/zflame1lowertstat1 stats0007/zflame1lowertstat1 stats0008/zflame1lowertstat1 stats0009/zflame1lowertstat1 stats0010/zflame1lowertstat1 stats0011/zflame1lowertstat1 stats0012/zflame1lowertstat1 stats0013/zflame1lowertstat1 stats0014/zflame1lowertstat1 stats0015/zflame1lowertstat1 stats0016/zflame1lowertstat1 stats0017/zflame1lowertstat1 stats0018/zflame1lowertstat1 stats0019/zflame1lowertstat1 stats0020/zflame1lowertstat1 stats0021/zflame1lowertstat1 stats0022/zflame1lowertstat1 stats0023/zflame1lowertstat1 stats0024/zflame1lowertstat1 stats0025/zflame1lowertstat1 stats0026/zflame1lowertstat1 stats0027/zflame1lowertstat1 stats0028/zflame1lowertstat1 stats0029/zflame1lowertstat1 stats0030/zflame1lowertstat1 stats0031/zflame1lowertstat1 stats0032/zflame1lowertstat1 stats0033/zflame1lowertstat1 stats0034/zflame1lowertstat1 stats0035/zflame1lowertstat1 stats0036/zflame1lowertstat1 stats0037/zflame1lowertstat1 stats0038/zflame1lowertstat1 stats0039/zflame1lowertstat1 stats0040/zflame1lowertstat1 stats0041/zflame1lowertstat1 stats0042/zflame1lowertstat1 stats0043/zflame1lowertstat1 stats0044/zflame1lowertstat1
  749. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/zflame1uppertstat1.nii.gz stats0000/zflame1uppertstat1 stats0001/zflame1uppertstat1 stats0002/zflame1uppertstat1 stats0003/zflame1uppertstat1 stats0004/zflame1uppertstat1 stats0005/zflame1uppertstat1 stats0006/zflame1uppertstat1 stats0007/zflame1uppertstat1 stats0008/zflame1uppertstat1 stats0009/zflame1uppertstat1 stats0010/zflame1uppertstat1 stats0011/zflame1uppertstat1 stats0012/zflame1uppertstat1 stats0013/zflame1uppertstat1 stats0014/zflame1uppertstat1 stats0015/zflame1uppertstat1 stats0016/zflame1uppertstat1 stats0017/zflame1uppertstat1 stats0018/zflame1uppertstat1 stats0019/zflame1uppertstat1 stats0020/zflame1uppertstat1 stats0021/zflame1uppertstat1 stats0022/zflame1uppertstat1 stats0023/zflame1uppertstat1 stats0024/zflame1uppertstat1 stats0025/zflame1uppertstat1 stats0026/zflame1uppertstat1 stats0027/zflame1uppertstat1 stats0028/zflame1uppertstat1 stats0029/zflame1uppertstat1 stats0030/zflame1uppertstat1 stats0031/zflame1uppertstat1 stats0032/zflame1uppertstat1 stats0033/zflame1uppertstat1 stats0034/zflame1uppertstat1 stats0035/zflame1uppertstat1 stats0036/zflame1uppertstat1 stats0037/zflame1uppertstat1 stats0038/zflame1uppertstat1 stats0039/zflame1uppertstat1 stats0040/zflame1uppertstat1 stats0041/zflame1uppertstat1 stats0042/zflame1uppertstat1 stats0043/zflame1uppertstat1 stats0044/zflame1uppertstat1
  750. /usr/share/fsl/5.0/bin/fslmerge -z stats0000/zstat1.nii.gz stats0000/zstat1 stats0001/zstat1 stats0002/zstat1 stats0003/zstat1 stats0004/zstat1 stats0005/zstat1 stats0006/zstat1 stats0007/zstat1 stats0008/zstat1 stats0009/zstat1 stats0010/zstat1 stats0011/zstat1 stats0012/zstat1 stats0013/zstat1 stats0014/zstat1 stats0015/zstat1 stats0016/zstat1 stats0017/zstat1 stats0018/zstat1 stats0019/zstat1 stats0020/zstat1 stats0021/zstat1 stats0022/zstat1 stats0023/zstat1 stats0024/zstat1 stats0025/zstat1 stats0026/zstat1 stats0027/zstat1 stats0028/zstat1 stats0029/zstat1 stats0030/zstat1 stats0031/zstat1 stats0032/zstat1 stats0033/zstat1 stats0034/zstat1 stats0035/zstat1 stats0036/zstat1 stats0037/zstat1 stats0038/zstat1 stats0039/zstat1 stats0040/zstat1 stats0041/zstat1 stats0042/zstat1 stats0043/zstat1 stats0044/zstat1
  751. /bin/mv stats0000 stats ; /bin/rm -rf stats?* tmp*
  752. /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
  753. /usr/share/fsl/5.0/bin/smoothest -d 3 -m mask -r stats/res4d > stats/smoothness
  754. </pre><hr>Post-stats<br><pre>
  755. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  756. echo 113935 > thresh_zstat1.vol
  757. zstat1: DLH=0.241368 VOLUME=113935 RESELS=21.0398
  758. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 1.64 -p 0.05 -d 0.241368 --volume=113935 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
  759. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
  760. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  761. 1.640208 3.398702
  762. Rendering using zmin=1.640208 zmax=3.398702
  763. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 1.640208 3.398702 rendered_thresh_zstat1
  764. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
  765. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  766. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>