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  5. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
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  6. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
    7. 

  7. <h2>Progress Report / Log</h2>
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  8. Started at Tue Mar 22 11:21:59 CET 2016<p>
    9. 

  9. Feat main script<br><pre>
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  10. 

  11. /bin/cp /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2nd_z164_nomc.fsf design.fsf
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  15. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
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  17. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat -gfeatprep
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  26. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 215316  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope1.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope1.feat -flame3
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  29. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 239341  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope1.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope1.feat -poststats 1
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  32. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 239677  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope1.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope1.feat -stop
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  41. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 242854  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope2.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope2.feat -flame3
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  44. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 292343  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope2.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope2.feat -poststats 1
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  47. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 292672  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope2.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope2.feat -stop
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  149. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 682870  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope9.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope9.feat -poststats 1
    150. 

  150. 683191
    151. 

  151. 

  152. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 683191  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope9.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope9.feat -stop
    153. 

  153. 683943
    154. 

  154. 

  155. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4028197  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat -I 10 -flame1
    156. 

  156. 684331
    157. 

  157. 

  158. /usr/share/fsl/5.0/bin/fsl_sub -T 0 -l logs -N feat3b_flame -j 684331 -t ./.flame
    159. 

  159. 686349
    160. 

  160. 

  161. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 686349  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat -flame3
    162. 

  162. 743372
    163. 

  163. 

  164. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 743372  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat -poststats 1
    165. 

  165. 743693
    166. 

  166. 

  167. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 743693  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope10.feat -stop
    168. 

  168. 744446
    169. 

  169. 

  170. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4028197  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat -I 11 -flame1
    171. 

  171. 744834
    172. 

  172. 

  173. /usr/share/fsl/5.0/bin/fsl_sub -T 0 -l logs -N feat3b_flame -j 744834 -t ./.flame
    174. 

  174. 746855
    175. 

  175. 

  176. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 746855  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat -flame3
    177. 

  177. 796623
    178. 

  178. 

  179. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 796623  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat -poststats 1
    180. 

  180. 796950
    181. 

  181. 

  182. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 796950  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope11.feat -stop
    183. 

  183. 797701
    184. 

  184. 

  185. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4028197  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat -I 12 -flame1
    186. 

  186. 798089
    187. 

  187. 

  188. /usr/share/fsl/5.0/bin/fsl_sub -T 0 -l logs -N feat3b_flame -j 798089 -t ./.flame
    189. 

  189. 800096
    190. 

  190. 

  191. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 800096  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat -flame3
    192. 

  192. 849879
    193. 

  193. 

  194. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 849879  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat -poststats 1
    195. 

  195. 850200
    196. 

  196. 

  197. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 850200  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope12.feat -stop
    198. 

  198. 850955
    199. 

  199. 

  200. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4028197  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat -I 13 -flame1
    201. 

  201. 851343
    202. 

  202. 

  203. /usr/share/fsl/5.0/bin/fsl_sub -T 0 -l logs -N feat3b_flame -j 851343 -t ./.flame
    204. 

  204. 853371
    205. 

  205. 

  206. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 853371  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat -flame3
    207. 

  207. 900907
    208. 

  208. 

  209. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 900907  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat -poststats 1
    210. 

  210. 901230
    211. 

  211. 

  212. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 901230  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope13.feat -stop
    213. 

  213. 901985
    214. 

  214. 

  215. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4028197  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat -I 14 -flame1
    216. 

  216. 902379
    217. 

  217. 

  218. /usr/share/fsl/5.0/bin/fsl_sub -T 0 -l logs -N feat3b_flame -j 902379 -t ./.flame
    219. 

  219. 904382
    220. 

  220. 

  221. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 904382  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat -flame3
    222. 

  222. 951805
    223. 

  223. 

  224. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 951805  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat -poststats 1
    225. 

  225. 952134
    226. 

  226. 

  227. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 952134  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope14.feat -stop
    228. 

  228. 952889
    229. 

  229. 

  230. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 4028197  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat -I 15 -flame1
    231. 

  231. 953277
    232. 

  232. 

  233. /usr/share/fsl/5.0/bin/fsl_sub -T 0 -l logs -N feat3b_flame -j 953277 -t ./.flame
    234. 

  234. 955335
    235. 

  235. 

  236. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 955335  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat -flame3
    237. 

  237. 996776
    238. 

  238. 

  239. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 996776  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat -poststats 1
    240. 

  240. 997104
    241. 

  241. 

  242. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 997104  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat -stop
    243. 

  243. 997857
    244. 

  244. 

  245. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 240438,293439,350202,407069,460521,513683,570475,627200,683943,744446,797701,850955,901985,952889,997857  /usr/share/fsl/5.0/bin/feat /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat/cope15.feat/design.fsf -D /home/data/psyinf/forrest_gump/collection/visloc/sub-05/2ndlvl_z164_nomc.gfeat -stop
    246. 

  246. </pre><hr>Higher-level input files preparation<br><pre>
    247. 

  247. 

  248. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat
    249. 

  249. 

  250. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_G8c8iR -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    251. 

  251. 

  252. 

  253. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_QycK2D -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    254. 

  254. 

  255. 

  256. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_jHtg7l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    257. 

  257. 

  258. 

  259. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_M8OFbD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    260. 

  260. 

  261. 

  262. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_dd5yMV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    263. 

  263. 

  264. 

  265. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_sppWSh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    266. 

  266. 

  267. 

  268. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_RE8cGG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    269. 

  269. 

  270. 

  271. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_5EHp9T -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    272. 

  272. 

  273. 

  274. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_NCOwCh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    275. 

  275. 

  276. 

  277. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_1NrxPR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    278. 

  278. 

  279. 

  280. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_nbxzcc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    281. 

  281. 

  282. 

  283. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_HiBqSA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    284. 

  284. 

  285. 

  286. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_blkgWQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    287. 

  287. 

  288. 

  289. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_FDH5Sb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    290. 

  290. 

  291. 

  292. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_pg3Apx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    293. 

  293. 

  294. 

  295. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_isEvVT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    296. 

  296. 

  297. 

  298. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_8Qcini -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    299. 

  299. 

  300. 

  301. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_hPpXTN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    302. 

  302. 

  303. 

  304. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_x3ocqb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    305. 

  305. 

  306. 

  307. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_CyqsLF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    308. 

  308. 

  309. 

  310. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Ye1irW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    311. 

  311. 

  312. 

  313. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_IoSRxk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    314. 

  314. 

  315. 

  316. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_zv0g2E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    317. 

  317. 

  318. 

  319. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_6nkJO2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    320. 

  320. 

  321. 

  322. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_UPfs7o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    323. 

  323. 

  324. 

  325. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_2oGizJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    326. 

  326. 

  327. 

  328. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_FVxm3b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    329. 

  329. 

  330. 

  331. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_QS4RkH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    332. 

  332. 

  333. 

  334. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_LbCpb4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    335. 

  335. 

  336. 

  337. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_NrZdwv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    338. 

  338. 

  339. 

  340. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_pYDraW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    341. 

  341. 

  342. 

  343. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_tLFwGg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    344. 

  344. 

  345. 

  346. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_doFUoF -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    347. 

  347. 

  348. 

  349. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat
    350. 

  350. 

  351. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_sOsDg6 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    352. 

  352. 

  353. 

  354. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_V4TtzL -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    355. 

  355. 

  356. 

  357. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_8gFoap -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    358. 

  358. 

  359. 

  360. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_2m22sO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    361. 

  361. 

  362. 

  363. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_x5t5C6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    364. 

  364. 

  365. 

  366. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_pmrO5v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    367. 

  367. 

  368. 

  369. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_QAEzyW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    370. 

  370. 

  371. 

  372. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_4d060d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    373. 

  373. 

  374. 

  375. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_s85sRC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    376. 

  376. 

  377. 

  378. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_YnPQGY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    379. 

  379. 

  380. 

  381. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_Bnmsoa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    382. 

  382. 

  383. 

  384. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_tuJvOz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    385. 

  385. 

  386. 

  387. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_EaBFtT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    388. 

  388. 

  389. 

  390. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_GXdbTh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    391. 

  391. 

  392. 

  393. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_VuHT4y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    394. 

  394. 

  395. 

  396. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_M5txvc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    397. 

  397. 

  398. 

  399. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_4NRRVm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    400. 

  400. 

  401. 

  402. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_vvyALI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    403. 

  403. 

  404. 

  405. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_exlxw8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    406. 

  406. 

  407. 

  408. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_cTjtEm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    409. 

  409. 

  410. 

  411. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_OvtnZK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    412. 

  412. 

  413. 

  414. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_ZHajf6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    415. 

  415. 

  416. 

  417. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_OhgJot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    418. 

  418. 

  419. 

  420. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_0IOhTF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    421. 

  421. 

  422. 

  423. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_XlqEi6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    424. 

  424. 

  425. 

  426. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_XuY3un -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    427. 

  427. 

  428. 

  429. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_JXhfNN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    430. 

  430. 

  431. 

  432. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_r7Yiic -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    433. 

  433. 

  434. 

  435. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_acTA4o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    436. 

  436. 

  437. 

  438. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_aC0H0J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    439. 

  439. 

  440. 

  441. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_KWMnb9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    442. 

  442. 

  443. 

  444. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_eHAvHu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    445. 

  445. 

  446. 

  447. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_IsChcI -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    448. 

  448. 

  449. 

  450. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat
    451. 

  451. 

  452. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_rJvX0d -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    453. 

  453. 

  454. 

  455. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_8WH955 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    456. 

  456. 

  457. 

  458. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_L1TA1M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    459. 

  459. 

  460. 

  461. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_vLRece -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    462. 

  462. 

  463. 

  464. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_Ie3Vpz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    465. 

  465. 

  466. 

  467. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_4SlwQJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    468. 

  468. 

  469. 

  470. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_yKq2eb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    471. 

  471. 

  472. 

  473. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_Oa9H5u -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    474. 

  474. 

  475. 

  476. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_0wA89H -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    477. 

  477. 

  478. 

  479. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_o5JSq3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    480. 

  480. 

  481. 

  482. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_j4AuJu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    483. 

  483. 

  484. 

  485. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_DPfEaI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    486. 

  486. 

  487. 

  488. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_BhwCv9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    489. 

  489. 

  490. 

  491. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_OdwCVA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    492. 

  492. 

  493. 

  494. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_B7VdmR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    495. 

  495. 

  496. 

  497. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_Cf9WHb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    498. 

  498. 

  499. 

  500. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_hfvo9A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    501. 

  501. 

  502. 

  503. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_N7b4qU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    504. 

  504. 

  505. 

  506. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_eXinse -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    507. 

  507. 

  508. 

  509. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_dBcvgD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    510. 

  510. 

  511. 

  512. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_bS1xcS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    513. 

  513. 

  514. 

  515. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_monjsk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    516. 

  516. 

  517. 

  518. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_yus4LK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    519. 

  519. 

  520. 

  521. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_o9wSZU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    522. 

  522. 

  523. 

  524. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_eZ8Zpm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    525. 

  525. 

  526. 

  527. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_0wtyyI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    528. 

  528. 

  529. 

  530. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_apPfhV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    531. 

  531. 

  532. 

  533. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_xN6tFj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    534. 

  534. 

  535. 

  536. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_AeutXC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    537. 

  537. 

  538. 

  539. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_MyucVS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    540. 

  540. 

  541. 

  542. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_lhPm4c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    543. 

  543. 

  544. 

  545. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_hAWN0x -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    546. 

  546. 

  547. 

  548. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_pUg7l1 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    549. 

  549. 

  550. 

  551. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat
    552. 

  552. 

  553. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_fTES0f -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    554. 

  554. 

  555. 

  556. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_GOAw83 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    557. 

  557. 

  558. 

  559. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_yiN0KN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    560. 

  560. 

  561. 

  562. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_fyqQ71 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    563. 

  563. 

  564. 

  565. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_U5EKan -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    566. 

  566. 

  567. 

  568. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_aB0u6I -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    569. 

  569. 

  570. 

  571. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_QYTmc5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    572. 

  572. 

  573. 

  574. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_97Bhxo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    575. 

  575. 

  576. 

  577. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_wVgpyI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    578. 

  578. 

  579. 

  580. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_DKyA24 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    581. 

  581. 

  582. 

  583. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_oa7APm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    584. 

  584. 

  585. 

  586. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_mrCwlN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    587. 

  587. 

  588. 

  589. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_Ogy0h7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    590. 

  590. 

  591. 

  592. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_SeRRdv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    593. 

  593. 

  594. 

  595. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_aK7HrT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    596. 

  596. 

  597. 

  598. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_kdvur7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    599. 

  599. 

  600. 

  601. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_ks5GNs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    602. 

  602. 

  603. 

  604. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_8AB5HS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    605. 

  605. 

  606. 

  607. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Sc0XLa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    608. 

  608. 

  609. 

  610. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_zTKKAy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    611. 

  611. 

  612. 

  613. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_VUuNCV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    614. 

  614. 

  615. 

  616. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_prMtWb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    617. 

  617. 

  618. 

  619. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_1oxmYt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    620. 

  620. 

  621. 

  622. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_3M3rTU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    623. 

  623. 

  624. 

  625. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_K0UZmi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    626. 

  626. 

  627. 

  628. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_AgsQAC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    629. 

  629. 

  630. 

  631. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_qm6L6Y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    632. 

  632. 

  633. 

  634. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_VnNPuk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    635. 

  635. 

  636. 

  637. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_VRaK6L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    638. 

  638. 

  639. 

  640. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_c8zrx6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    641. 

  641. 

  642. 

  643. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_a3GYJl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    644. 

  644. 

  645. 

  646. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_mz0rTJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    647. 

  647. 

  648. 

  649. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_3MZ8Hd -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    650. 

  650. 

  651. 

  652. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg/standard bg_image
    653. 

  653. 

  654. /usr/share/fsl/5.0/bin/fslmerge -t mask  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/mask /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/mask /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/mask /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/mask
    655. 

  655. 

  656. mkdir -p inputreg
    657. 

  657. 

  658. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 4 -Tmean masksum -odt short
    659. 

  659. 

  660. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 4 -add masksum masksum
    661. 

  661. 

  662. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 8 masksum_overlay
    663. 

  663. 

  664. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
    665. 

  665. 

  666. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
    667. 

  667. 

  668. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
    669. 

  669. 

  670. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
    671. 

  671. 

  672. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
    673. 

  673. 

  674. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
    675. 

  675. 

  676. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 3 -uthr 3 -bin -mul maskunique maskunique
    677. 

  677. 

  678. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 4 maskunique_overlay
    679. 

  679. 

  680. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
    681. 

  681. 

  682. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    683. 

  683. 

  684. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    685. 

  685. 

  686. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/mean_func /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/mean_func /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/mean_func /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/mean_func
    687. 

  687. 

  688. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    689. 

  689. 

  690. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope1
    691. 

  691. 

  692. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    693. 

  693. 

  694. printf '0.2106072 ' >> design.lcon
    695. 

  695. 

  696. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope1
    697. 

  697. 

  698. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    699. 

  699. 

  700. /usr/share/fsl/5.0/bin/fslmerge -t cope2  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope2
    701. 

  701. 

  702. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
    703. 

  703. 

  704. printf '0.23315667499999998 ' >> design.lcon
    705. 

  705. 

  706. /usr/share/fsl/5.0/bin/fslmerge -t varcope2  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope2
    707. 

  707. 

  708. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
    709. 

  709. 

  710. /usr/share/fsl/5.0/bin/fslmerge -t cope3  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope3
    711. 

  711. 

  712. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
    713. 

  713. 

  714. printf '0.29644135000000005 ' >> design.lcon
    715. 

  715. 

  716. /usr/share/fsl/5.0/bin/fslmerge -t varcope3  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope3
    717. 

  717. 

  718. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
    719. 

  719. 

  720. /usr/share/fsl/5.0/bin/fslmerge -t cope4  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope4
    721. 

  721. 

  722. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
    723. 

  723. 

  724. printf '0.234589975 ' >> design.lcon
    725. 

  725. 

  726. /usr/share/fsl/5.0/bin/fslmerge -t varcope4  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope4
    727. 

  727. 

  728. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
    729. 

  729. 

  730. /usr/share/fsl/5.0/bin/fslmerge -t cope5  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope5
    731. 

  731. 

  732. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
    733. 

  733. 

  734. printf '0.23277472500000002 ' >> design.lcon
    735. 

  735. 

  736. /usr/share/fsl/5.0/bin/fslmerge -t varcope5  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope5
    737. 

  737. 

  738. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
    739. 

  739. 

  740. /usr/share/fsl/5.0/bin/fslmerge -t cope6  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope6
    741. 

  741. 

  742. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
    743. 

  743. 

  744. printf '0.23277472500000002 ' >> design.lcon
    745. 

  745. 

  746. /usr/share/fsl/5.0/bin/fslmerge -t varcope6  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope6
    747. 

  747. 

  748. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
    749. 

  749. 

  750. /usr/share/fsl/5.0/bin/fslmerge -t cope7  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope7
    751. 

  751. 

  752. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
    753. 

  753. 

  754. printf '0.57879525 ' >> design.lcon
    755. 

  755. 

  756. /usr/share/fsl/5.0/bin/fslmerge -t varcope7  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope7
    757. 

  757. 

  758. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
    759. 

  759. 

  760. /usr/share/fsl/5.0/bin/fslmerge -t cope8  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope8
    761. 

  761. 

  762. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
    763. 

  763. 

  764. printf '0.5880042000000001 ' >> design.lcon
    765. 

  765. 

  766. /usr/share/fsl/5.0/bin/fslmerge -t varcope8  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope8
    767. 

  767. 

  768. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
    769. 

  769. 

  770. /usr/share/fsl/5.0/bin/fslmerge -t cope9  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope9
    771. 

  771. 

  772. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
    773. 

  773. 

  774. printf '0.5829515000000001 ' >> design.lcon
    775. 

  775. 

  776. /usr/share/fsl/5.0/bin/fslmerge -t varcope9  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope9
    777. 

  777. 

  778. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
    779. 

  779. 

  780. /usr/share/fsl/5.0/bin/fslmerge -t cope10  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope10
    781. 

  781. 

  782. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
    783. 

  783. 

  784. printf '1.15512475 ' >> design.lcon
    785. 

  785. 

  786. /usr/share/fsl/5.0/bin/fslmerge -t varcope10  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope10
    787. 

  787. 

  788. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
    789. 

  789. 

  790. /usr/share/fsl/5.0/bin/fslmerge -t cope11  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope11
    791. 

  791. 

  792. /usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11
    793. 

  793. 

  794. printf '1.1392805 ' >> design.lcon
    795. 

  795. 

  796. /usr/share/fsl/5.0/bin/fslmerge -t varcope11  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope11
    797. 

  797. 

  798. /usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11
    799. 

  799. 

  800. /usr/share/fsl/5.0/bin/fslmerge -t cope12  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope12
    801. 

  801. 

  802. /usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12
    803. 

  803. 

  804. printf '0.56892985 ' >> design.lcon
    805. 

  805. 

  806. /usr/share/fsl/5.0/bin/fslmerge -t varcope12  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope12
    807. 

  807. 

  808. /usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12
    809. 

  809. 

  810. /usr/share/fsl/5.0/bin/fslmerge -t cope13  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope13
    811. 

  811. 

  812. /usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13
    813. 

  813. 

  814. printf '1.1549697499999998 ' >> design.lcon
    815. 

  815. 

  816. /usr/share/fsl/5.0/bin/fslmerge -t varcope13  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope13
    817. 

  817. 

  818. /usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13
    819. 

  819. 

  820. /usr/share/fsl/5.0/bin/fslmerge -t cope14  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope14
    821. 

  821. 

  822. /usr/share/fsl/5.0/bin/fslmaths cope14 -mas mask cope14
    823. 

  823. 

  824. printf '1.13728525 ' >> design.lcon
    825. 

  825. 

  826. /usr/share/fsl/5.0/bin/fslmerge -t varcope14  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope14
    827. 

  827. 

  828. /usr/share/fsl/5.0/bin/fslmaths varcope14 -mas mask varcope14
    829. 

  829. 

  830. /usr/share/fsl/5.0/bin/fslmerge -t cope15  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/cope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/cope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/cope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/cope15
    831. 

  831. 

  832. /usr/share/fsl/5.0/bin/fslmaths cope15 -mas mask cope15
    833. 

  833. 

  834. printf '1.136858 ' >> design.lcon
    835. 

  835. 

  836. /usr/share/fsl/5.0/bin/fslmerge -t varcope15  /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-1.feat/reg_standard/stats/varcope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-2.feat/reg_standard/stats/varcope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-3.feat/reg_standard/stats/varcope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-05/run-4.feat/reg_standard/stats/varcope15
    837. 

  837. 

  838. /usr/share/fsl/5.0/bin/fslmaths varcope15 -mas mask varcope15
    839. 

  839. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    840.