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- #!/bin/bash
- set -e
- set -u
- cat << EOT > code/compute_1stlvl_glm.submit
- # auto-generate file (generate_1st_level_design.sh) -- do not modify!
- universe = vanilla
- output = condor_logs/\$(CLUSTER).\$(PROCESS).out
- error = condor_logs/\$(CLUSTER).\$(PROCESS).err
- log = condor_logs/\$(CLUSTER).\$(PROCESS).log
- getenv = True
- request_cpus = 1
- request_memory = 4000
- should_transfer_files = NO
- transfer_executable = False
- initialdir = /home/data/psyinf/forrest_gump/collection/visloc
- executable = \$ENV(FSLDIR)/bin/feat
- EOT
- for sub in sub-*; do
- subid=$(echo "$sub" | cut -d '-' -f2-)
- for run in $sub/onsets/run*; do
- runid=$(echo "$(basename $run)" | cut -d '-' -f2-)
- sed -e "s/###SUB###/sub-${subid}/g" -e "s/###RUN###/run-${runid}/g" code/1stlevel_design.fsf > "$sub/run-${runid}_1st.fsf"
- printf "arguments = $sub/run-${runid}_1st.fsf\nqueue\n" >> code/compute_1stlvl_glm.submit
- done
- done
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