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feat2_pre

feat2_pre 39 KB
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  1. </pre><hr>Higher-level input files preparation<br><pre>
    2. 

  2. 

  3. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat
    4. 

  4. 

  5. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_SD6IlH -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    6. 

  6. 

  7. 

  8. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_7ZEBCj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    9. 

  9. 

  10. 

  11. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_j9TV4Y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    12. 

  12. 

  13. 

  14. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_nUVbuk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    15. 

  15. 

  16. 

  17. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_cHPpXF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    18. 

  18. 

  19. 

  20. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_fesI2Y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    21. 

  21. 

  22. 

  23. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_hiFG0s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    24. 

  24. 

  25. 

  26. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_jsgwmS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    27. 

  27. 

  28. 

  29. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_oDfJHh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    30. 

  30. 

  31. 

  32. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_L4GMwC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    33. 

  33. 

  34. 

  35. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_UePD7Q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    36. 

  36. 

  37. 

  38. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_LS14Vb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    39. 

  39. 

  40. 

  41. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_ZeufiB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    42. 

  42. 

  43. 

  44. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_PswlIQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    45. 

  45. 

  46. 

  47. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_BJEZze -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    48. 

  48. 

  49. 

  50. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_y8wcHR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    51. 

  51. 

  52. 

  53. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_VwHZb4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    54. 

  54. 

  55. 

  56. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_13aJOA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    57. 

  57. 

  58. 

  59. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_3MSEUY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    60. 

  60. 

  61. 

  62. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_ZLtLWd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    63. 

  63. 

  64. 

  65. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_8B31OD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    66. 

  66. 

  67. 

  68. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_bAaZOR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    69. 

  69. 

  70. 

  71. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_kNxqNh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    72. 

  72. 

  73. 

  74. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_SFQFUH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    75. 

  75. 

  76. 

  77. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_m8y97Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    78. 

  78. 

  79. 

  80. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1vJK2t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    81. 

  81. 

  82. 

  83. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_2nPRa1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    84. 

  84. 

  85. 

  86. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_2HCdgd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    87. 

  87. 

  88. 

  89. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_Eh1WXA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    90. 

  90. 

  91. 

  92. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_rP63xX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    93. 

  93. 

  94. 

  95. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_WAor1f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    96. 

  96. 

  97. 

  98. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_0bnUPB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    99. 

  99. 

  100. 

  101. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_MoOmK2 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    102. 

  102. 

  103. 

  104. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat
    105. 

  105. 

  106. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_q9jlgk -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    107. 

  107. 

  108. 

  109. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_glLfNc -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    110. 

  110. 

  111. 

  112. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_VJ1zZN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    113. 

  113. 

  114. 

  115. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_8iCxaf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    116. 

  116. 

  117. 

  118. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_1SCPYC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    119. 

  119. 

  120. 

  121. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_OSZhKW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    122. 

  122. 

  123. 

  124. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_jYpH6i -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    125. 

  125. 

  126. 

  127. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_LV5lRG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    128. 

  128. 

  129. 

  130. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_4iG0p5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    131. 

  131. 

  132. 

  133. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_1buxWg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    134. 

  134. 

  135. 

  136. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_HjJ53B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    137. 

  137. 

  138. 

  139. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_eM8NMU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    140. 

  140. 

  141. 

  142. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_TGVqLi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    143. 

  143. 

  144. 

  145. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Cg02xw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    146. 

  146. 

  147. 

  148. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_qUs5M0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    149. 

  149. 

  150. 

  151. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_vOvkDe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    152. 

  152. 

  153. 

  154. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_zcxalE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    155. 

  155. 

  156. 

  157. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Og5Hg1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    158. 

  158. 

  159. 

  160. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_o7rRjn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    161. 

  161. 

  162. 

  163. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_BsO9WB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    164. 

  164. 

  165. 

  166. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_HboLq2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    167. 

  167. 

  168. 

  169. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_UO4Ffo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    170. 

  170. 

  171. 

  172. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_ffHr4x -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    173. 

  173. 

  174. 

  175. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_y6xhtW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    176. 

  176. 

  177. 

  178. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_mxkvTn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    179. 

  179. 

  180. 

  181. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_t4D5ey -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    182. 

  182. 

  183. 

  184. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Tz5xKW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    185. 

  185. 

  186. 

  187. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_3KoAOj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    188. 

  188. 

  189. 

  190. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_9lc6oy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    191. 

  191. 

  192. 

  193. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_PGbPKW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    194. 

  194. 

  195. 

  196. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_TEv5tk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    197. 

  197. 

  198. 

  199. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_3Lr4Cv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    200. 

  200. 

  201. 

  202. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_DV9LwX -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    203. 

  203. 

  204. 

  205. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat
    206. 

  206. 

  207. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_29omwr -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    208. 

  208. 

  209. 

  210. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_FEgGmd -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    211. 

  211. 

  212. 

  213. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_UJQrGZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    214. 

  214. 

  215. 

  216. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_NZV9xl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    217. 

  217. 

  218. 

  219. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_Y4nZEG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    220. 

  220. 

  221. 

  222. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_NNftUU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    223. 

  223. 

  224. 

  225. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_dFffci -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    226. 

  226. 

  227. 

  228. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_7AsFhB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    229. 

  229. 

  230. 

  231. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_UQjMzO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    232. 

  232. 

  233. 

  234. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_O9T52c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    235. 

  235. 

  236. 

  237. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_lSXGCA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    238. 

  238. 

  239. 

  240. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_TwUbzP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    241. 

  241. 

  242. 

  243. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_gQ7T5f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    244. 

  244. 

  245. 

  246. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_81ZewE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    247. 

  247. 

  248. 

  249. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_STdkFW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    250. 

  250. 

  251. 

  252. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_lUOWUm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    253. 

  253. 

  254. 

  255. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_4h81CH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    256. 

  256. 

  257. 

  258. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_glGM92 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    259. 

  259. 

  260. 

  261. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_AHfCfB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    262. 

  262. 

  263. 

  264. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_RYsyLR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    265. 

  265. 

  266. 

  267. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_EcZ2je -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    268. 

  268. 

  269. 

  270. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_UhFZYx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    271. 

  271. 

  272. 

  273. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_7TAF5Q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    274. 

  274. 

  275. 

  276. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_o1dpAb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    277. 

  277. 

  278. 

  279. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_k0V7Az -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    280. 

  280. 

  281. 

  282. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_NOciUP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    283. 

  283. 

  284. 

  285. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_iJ6Eid -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    286. 

  286. 

  287. 

  288. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_sa82ZA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    289. 

  289. 

  290. 

  291. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_P6j7TW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    292. 

  292. 

  293. 

  294. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_mwY9ta -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    295. 

  295. 

  296. 

  297. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_KGisAv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    298. 

  298. 

  299. 

  300. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_nyUVYX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    301. 

  301. 

  302. 

  303. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_u09EWe -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    304. 

  304. 

  305. 

  306. /usr/share/fsl/5.0/bin/featregapply /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat
    307. 

  307. 

  308. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_WTaV7E -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    309. 

  309. 

  310. 

  311. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_hx2xSu -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    312. 

  312. 

  313. 

  314. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_DlbAsd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    315. 

  315. 

  316. 

  317. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_dvmGlz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    318. 

  318. 

  319. 

  320. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_8zBq1U -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    321. 

  321. 

  322. 

  323. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_W9vO0l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    324. 

  324. 

  325. 

  326. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_gM3LYH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    327. 

  327. 

  328. 

  329. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope14 -out frgrot_pyeel6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    330. 

  330. 

  331. 

  332. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope15 -out frgrot_ppclDi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    333. 

  333. 

  334. 

  335. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_hRsXIH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    336. 

  336. 

  337. 

  338. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_EcH7F1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    339. 

  339. 

  340. 

  341. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_aSvNHj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    342. 

  342. 

  343. 

  344. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_FxmAqE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    345. 

  345. 

  346. 

  347. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_A1Kfj3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    348. 

  348. 

  349. 

  350. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_kxeTYh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    351. 

  351. 

  352. 

  353. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_8s1G2P -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    354. 

  354. 

  355. 

  356. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_R5D1B8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    357. 

  357. 

  358. 

  359. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_eWRoFu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    360. 

  360. 

  361. 

  362. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_X1QA1S -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    363. 

  363. 

  364. 

  365. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_PFT3Md -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    366. 

  366. 

  367. 

  368. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_DoDXrq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    369. 

  369. 

  370. 

  371. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_vQCf1K -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    372. 

  372. 

  373. 

  374. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope14 -out frgrot_T6gVy6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    375. 

  375. 

  376. 

  377. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope15 -out frgrot_BZSn2k -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    378. 

  378. 

  379. 

  380. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_EZYcrF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    381. 

  381. 

  382. 

  383. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_x02yR4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    384. 

  384. 

  385. 

  386. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_v9Eoxo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    387. 

  387. 

  388. 

  389. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Kf7kzM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    390. 

  390. 

  391. 

  392. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_w23E08 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    393. 

  393. 

  394. 

  395. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_veQPmq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    396. 

  396. 

  397. 

  398. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_bxw7xS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    399. 

  399. 

  400. 

  401. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Qw31Pg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    402. 

  402. 

  403. 

  404. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_VWfIEz -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    405. 

  405. 

  406. 

  407. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg/standard bg_image
    408. 

  408. 

  409. /usr/share/fsl/5.0/bin/fslmerge -t mask  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/mask /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/mask /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/mask /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/mask
    410. 

  410. 

  411. mkdir -p inputreg
    412. 

  412. 

  413. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 4 -Tmean masksum -odt short
    414. 

  414. 

  415. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 4 -add masksum masksum
    416. 

  416. 

  417. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 8 masksum_overlay
    418. 

  418. 

  419. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
    420. 

  420. 

  421. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
    422. 

  422. 

  423. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
    424. 

  424. 

  425. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
    426. 

  426. 

  427. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
    428. 

  428. 

  429. /usr/share/fsl/5.0/bin/fslmaths /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
    430. 

  430. 

  431. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 3 -uthr 3 -bin -mul maskunique maskunique
    432. 

  432. 

  433. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 4 maskunique_overlay
    434. 

  434. 

  435. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
    436. 

  436. 

  437. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    438. 

  438. 

  439. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    440. 

  440. 

  441. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/mean_func /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/mean_func /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/mean_func /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/mean_func
    442. 

  442. 

  443. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    444. 

  444. 

  445. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope1
    446. 

  446. 

  447. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    448. 

  448. 

  449. printf '0.21057142499999998 ' >> design.lcon
    450. 

  450. 

  451. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope1 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope1
    452. 

  452. 

  453. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    454. 

  454. 

  455. /usr/share/fsl/5.0/bin/fslmerge -t cope2  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope2
    456. 

  456. 

  457. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
    458. 

  458. 

  459. printf '0.233207325 ' >> design.lcon
    460. 

  460. 

  461. /usr/share/fsl/5.0/bin/fslmerge -t varcope2  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope2 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope2
    462. 

  462. 

  463. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
    464. 

  464. 

  465. /usr/share/fsl/5.0/bin/fslmerge -t cope3  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope3
    466. 

  466. 

  467. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
    468. 

  468. 

  469. printf '0.296461175 ' >> design.lcon
    470. 

  470. 

  471. /usr/share/fsl/5.0/bin/fslmerge -t varcope3  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope3 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope3
    472. 

  472. 

  473. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
    474. 

  474. 

  475. /usr/share/fsl/5.0/bin/fslmerge -t cope4  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope4
    476. 

  476. 

  477. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
    478. 

  478. 

  479. printf '0.2345093 ' >> design.lcon
    480. 

  480. 

  481. /usr/share/fsl/5.0/bin/fslmerge -t varcope4  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope4 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope4
    482. 

  482. 

  483. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
    484. 

  484. 

  485. /usr/share/fsl/5.0/bin/fslmerge -t cope5  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope5
    486. 

  486. 

  487. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
    488. 

  488. 

  489. printf '0.232709575 ' >> design.lcon
    490. 

  490. 

  491. /usr/share/fsl/5.0/bin/fslmerge -t varcope5  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope5 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope5
    492. 

  492. 

  493. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
    494. 

  494. 

  495. /usr/share/fsl/5.0/bin/fslmerge -t cope6  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope6
    496. 

  496. 

  497. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
    498. 

  498. 

  499. printf '0.232709575 ' >> design.lcon
    500. 

  500. 

  501. /usr/share/fsl/5.0/bin/fslmerge -t varcope6  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope6 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope6
    502. 

  502. 

  503. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
    504. 

  504. 

  505. /usr/share/fsl/5.0/bin/fslmerge -t cope7  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope7
    506. 

  506. 

  507. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
    508. 

  508. 

  509. printf '0.5788201 ' >> design.lcon
    510. 

  510. 

  511. /usr/share/fsl/5.0/bin/fslmerge -t varcope7  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope7 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope7
    512. 

  512. 

  513. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
    514. 

  514. 

  515. /usr/share/fsl/5.0/bin/fslmerge -t cope8  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope8
    516. 

  516. 

  517. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
    518. 

  518. 

  519. printf '0.5881132 ' >> design.lcon
    520. 

  520. 

  521. /usr/share/fsl/5.0/bin/fslmerge -t varcope8  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope8 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope8
    522. 

  522. 

  523. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
    524. 

  524. 

  525. /usr/share/fsl/5.0/bin/fslmerge -t cope9  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope9
    526. 

  526. 

  527. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
    528. 

  528. 

  529. printf '0.582819325 ' >> design.lcon
    530. 

  530. 

  531. /usr/share/fsl/5.0/bin/fslmerge -t varcope9  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope9 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope9
    532. 

  532. 

  533. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
    534. 

  534. 

  535. /usr/share/fsl/5.0/bin/fslmerge -t cope10  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope10
    536. 

  536. 

  537. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
    538. 

  538. 

  539. printf '1.1550025 ' >> design.lcon
    540. 

  540. 

  541. /usr/share/fsl/5.0/bin/fslmerge -t varcope10  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope10 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope10
    542. 

  542. 

  543. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
    544. 

  544. 

  545. /usr/share/fsl/5.0/bin/fslmerge -t cope11  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope11
    546. 

  546. 

  547. /usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11
    548. 

  548. 

  549. printf '1.139402 ' >> design.lcon
    550. 

  550. 

  551. /usr/share/fsl/5.0/bin/fslmerge -t varcope11  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope11 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope11
    552. 

  552. 

  553. /usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11
    554. 

  554. 

  555. /usr/share/fsl/5.0/bin/fslmerge -t cope12  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope12
    556. 

  556. 

  557. /usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12
    558. 

  558. 

  559. printf '0.56896935 ' >> design.lcon
    560. 

  560. 

  561. /usr/share/fsl/5.0/bin/fslmerge -t varcope12  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope12 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope12
    562. 

  562. 

  563. /usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12
    564. 

  564. 

  565. /usr/share/fsl/5.0/bin/fslmerge -t cope13  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope13
    566. 

  566. 

  567. /usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13
    568. 

  568. 

  569. printf '1.15478 ' >> design.lcon
    570. 

  570. 

  571. /usr/share/fsl/5.0/bin/fslmerge -t varcope13  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope13 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope13
    572. 

  572. 

  573. /usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13
    574. 

  574. 

  575. /usr/share/fsl/5.0/bin/fslmerge -t cope14  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope14
    576. 

  576. 

  577. /usr/share/fsl/5.0/bin/fslmaths cope14 -mas mask cope14
    578. 

  578. 

  579. printf '1.13735125 ' >> design.lcon
    580. 

  580. 

  581. /usr/share/fsl/5.0/bin/fslmerge -t varcope14  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope14 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope14
    582. 

  582. 

  583. /usr/share/fsl/5.0/bin/fslmaths varcope14 -mas mask varcope14
    584. 

  584. 

  585. /usr/share/fsl/5.0/bin/fslmerge -t cope15  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/cope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/cope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/cope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/cope15
    586. 

  586. 

  587. /usr/share/fsl/5.0/bin/fslmaths cope15 -mas mask cope15
    588. 

  588. 

  589. printf '1.136857 ' >> design.lcon
    590. 

  590. 

  591. /usr/share/fsl/5.0/bin/fslmerge -t varcope15  /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-1.feat/reg_standard/stats/varcope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-2.feat/reg_standard/stats/varcope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-3.feat/reg_standard/stats/varcope15 /home/data/psyinf/forrest_gump/collection/visloc/sub-15/run-4.feat/reg_standard/stats/varcope15
    592. 

  592. 

  593. /usr/share/fsl/5.0/bin/fslmaths varcope15 -mas mask varcope15
    594.