Browse Source

Add hand-titrated ROI masks

Michael Hanke 8 years ago
parent
commit
2d857ebc22
100 changed files with 116 additions and 116 deletions
  1. 18 116
      code/stats2rois.cfg
  2. 1 0
      sub-01/rois/VIS_1_mask.nii.gz
  3. 1 0
      sub-01/rois/lEBA_2_mask.nii.gz
  4. 1 0
      sub-01/rois/lFFA_6_mask.nii.gz
  5. 1 0
      sub-01/rois/lFFA_8_mask.nii.gz
  6. 1 0
      sub-01/rois/lLOC_1_mask.nii.gz
  7. 1 0
      sub-01/rois/lPPA_4_mask.nii.gz
  8. 1 0
      sub-01/rois/rEBA_1_mask.nii.gz
  9. 1 0
      sub-01/rois/rFFA_2_mask.nii.gz
  10. 1 0
      sub-01/rois/rFFA_3_mask.nii.gz
  11. 1 0
      sub-01/rois/rLOC_3_mask.nii.gz
  12. 1 0
      sub-01/rois/rPPA_1_mask.nii.gz
  13. 1 0
      sub-02/rois/VIS_1_mask.nii.gz
  14. 1 0
      sub-02/rois/lEBA_3_mask.nii.gz
  15. 1 0
      sub-02/rois/lFFA_4_mask.nii.gz
  16. 1 0
      sub-02/rois/lLOC_2_mask.nii.gz
  17. 1 0
      sub-02/rois/lPPA_6_mask.nii.gz
  18. 1 0
      sub-02/rois/rEBA_1_mask.nii.gz
  19. 1 0
      sub-02/rois/rFFA_1_mask.nii.gz
  20. 1 0
      sub-02/rois/rLOC_1_mask.nii.gz
  21. 1 0
      sub-02/rois/rPPA_3_mask.nii.gz
  22. 1 0
      sub-03/rois/lEBA_2_mask.nii.gz
  23. 1 0
      sub-03/rois/lLOC_2_mask.nii.gz
  24. 1 0
      sub-03/rois/lPPA_7_mask.nii.gz
  25. 1 0
      sub-03/rois/rEBA_1_mask.nii.gz
  26. 1 0
      sub-03/rois/rFFA_2.nii.gz_mask.nii.gz
  27. 1 0
      sub-03/rois/rFFA_2.nii_mask.nii.gz
  28. 1 0
      sub-03/rois/rLOC_1_mask.nii.gz
  29. 1 0
      sub-03/rois/rOFA_1_mask.nii.gz
  30. 1 0
      sub-03/rois/rPPA_4_mask.nii.gz
  31. 1 0
      sub-04/rois/VIS_1_mask.nii.gz
  32. 1 0
      sub-04/rois/lEBA_2_mask.nii.gz
  33. 1 0
      sub-04/rois/lLOC_1_mask.nii.gz
  34. 1 0
      sub-04/rois/rEBA_1_mask.nii.gz
  35. 1 0
      sub-04/rois/rFFA_1_mask.nii.gz
  36. 1 0
      sub-04/rois/rLOC_2_mask.nii.gz
  37. 1 0
      sub-04/rois/rOFA_2_mask.nii.gz
  38. 1 0
      sub-04/rois/rPPA_1_mask.nii.gz
  39. 1 0
      sub-05/rois/VIS_1_mask.nii.gz
  40. 1 0
      sub-05/rois/VIS_2_mask.nii.gz
  41. 1 0
      sub-05/rois/lEBA_2_mask.nii.gz
  42. 1 0
      sub-05/rois/lFFA_4_mask.nii.gz
  43. 1 0
      sub-05/rois/lLOC_1_mask.nii.gz
  44. 1 0
      sub-05/rois/lPPA_3_mask.nii.gz
  45. 1 0
      sub-05/rois/rEBA_1_mask.nii.gz
  46. 1 0
      sub-05/rois/rFFA_3_mask.nii.gz
  47. 1 0
      sub-05/rois/rLOC_2_mask.nii.gz
  48. 1 0
      sub-05/rois/rOFA_5_mask.nii.gz
  49. 1 0
      sub-05/rois/rPPA_3_mask.nii.gz
  50. 1 0
      sub-06/rois/lEBA_2_mask.nii.gz
  51. 1 0
      sub-06/rois/lFFA_2_mask.nii.gz
  52. 1 0
      sub-06/rois/lPPA_6_mask.nii.gz
  53. 1 0
      sub-06/rois/rEBA_1_mask.nii.gz
  54. 1 0
      sub-06/rois/rPPA_3_mask.nii.gz
  55. 1 0
      sub-09/rois/VIS_1_mask.nii.gz
  56. 1 0
      sub-09/rois/lEBA_2_mask.nii.gz
  57. 1 0
      sub-09/rois/lEBA_3_mask.nii.gz
  58. 1 0
      sub-09/rois/lFFA_1_mask.nii.gz
  59. 1 0
      sub-09/rois/lLOC_1_mask.nii.gz
  60. 1 0
      sub-09/rois/rEBA_1_mask.nii.gz
  61. 1 0
      sub-09/rois/rFFA_2_mask.nii.gz
  62. 1 0
      sub-09/rois/rFFA_4_mask.nii.gz
  63. 1 0
      sub-09/rois/rLOC_2_mask.nii.gz
  64. 1 0
      sub-09/rois/rOFA_3_mask.nii.gz
  65. 1 0
      sub-09/rois/rPPA_4_mask.nii.gz
  66. 1 0
      sub-10/rois/VIS_1_mask.nii.gz
  67. 1 0
      sub-10/rois/lEBA_2_mask.nii.gz
  68. 1 0
      sub-10/rois/lFFA_3_mask.nii.gz
  69. 1 0
      sub-10/rois/lLOC_1_mask.nii.gz
  70. 1 0
      sub-10/rois/lOFA_4_mask.nii.gz
  71. 1 0
      sub-10/rois/lPPA_5_mask.nii.gz
  72. 1 0
      sub-10/rois/rEBA_1_mask.nii.gz
  73. 1 0
      sub-10/rois/rFFA_1_mask.nii.gz
  74. 1 0
      sub-10/rois/rLOC_2_mask.nii.gz
  75. 1 0
      sub-10/rois/rOFA_2_mask.nii.gz
  76. 1 0
      sub-10/rois/rPPA_4_mask.nii.gz
  77. 1 0
      sub-14/rois/VIS_1_mask.nii.gz
  78. 1 0
      sub-14/rois/VIS_2_mask.nii.gz
  79. 1 0
      sub-14/rois/lEBA_2_mask.nii.gz
  80. 1 0
      sub-14/rois/lFFA_3_mask.nii.gz
  81. 1 0
      sub-14/rois/lLOC_3_mask.nii.gz
  82. 1 0
      sub-14/rois/lLOC_4_mask.nii.gz
  83. 1 0
      sub-14/rois/lOFA_5_mask.nii.gz
  84. 1 0
      sub-14/rois/lPPA_2_mask.nii.gz
  85. 1 0
      sub-14/rois/rEBA_1_mask.nii.gz
  86. 1 0
      sub-14/rois/rFFA_2_mask.nii.gz
  87. 1 0
      sub-14/rois/rLOC_1_mask.nii.gz
  88. 1 0
      sub-14/rois/rOFA_4_mask.nii.gz
  89. 1 0
      sub-14/rois/rPPA_1_mask.nii.gz
  90. 1 0
      sub-15/rois/VIS_1_mask.nii.gz
  91. 1 0
      sub-15/rois/VIS_2_mask.nii.gz
  92. 1 0
      sub-15/rois/lEBA_2_mask.nii.gz
  93. 1 0
      sub-15/rois/lFFA_6_mask.nii.gz
  94. 1 0
      sub-15/rois/lLOC_2_mask.nii.gz
  95. 1 0
      sub-15/rois/lLOC_3_mask.nii.gz
  96. 1 0
      sub-15/rois/lOFA_2_mask.nii.gz
  97. 1 0
      sub-15/rois/lPPA_2_mask.nii.gz
  98. 1 0
      sub-15/rois/rEBA_1_mask.nii.gz
  99. 1 0
      sub-15/rois/rFFA_1_mask.nii.gz
  100. 0 0
      sub-15/rois/rLOC_1_mask.nii.gz

+ 18 - 116
code/stats2rois.cfg

@@ -1,132 +1,34 @@
 [sub-01]
 # copeID; cluster-forming threshold; cluster ID
-rFFA = 7 2.3 3 5
-rPPA = 3 2.3 2
-lPPA = 8 2.3 5
-rEBA = 4 3.1 1
-lEBA = 4 3.1 5
-rLOC = 10 2.3 2
-lLOC = 10 2.3 8
-VIS = 6 2.3 1 2
+# FFA threshold chosen to match ~1cm3 for rpFFA (see Kanwisher et al, 1997)
+raFFA = 2 2.5 5
+rpFFA = 2 2.5 3
+rOFA = 2 2.5 8
+laFFA = 2 2.5 16
+lpFFA = 2 2.5 18
+lOFA = 2 2.5 17
+
 [sub-02]
-rFFA = 7 3.1 3
-lFFA = 7 3.1 6
-rPPA = 8 2.6 3
-lPPA = 8 2.6 26
-rEBA = 9 3.3 1
-lEBA = 9 2.8 12
-rLOC = 10 2.3 1
-lLOC = 10 2.3 20
-VIS = 6 2.3 5
+rpFFA = 2 2.9 5
+laFFA = 2 2.9 12 14
+lpFFA = 2 2.9 13
+lOFA = 2 2.9 11
+
 [sub-03]
-rFFA = 7 2.0 10 12
-rLOC = 10 2.5 1 3
-lLOC = 10 2.5 9
+rpFFA = 2 2.0 10 12
+
+
+
 [sub-04]
-rPPA = 8 2.7 5
-rEBA = 9 2.7 1
-rLOC = 10 2.3 1
-lLOC = 10 2.3 7
 [sub-05]
-rFFA = 7 1.9 14
-rPPA = 8 2.7 5
-rEBA = 9 2.7 2
-lEBA = 9 2.7 11
-rLOC = 10 2.3 3
-VIS = 6 1.7 1
 [sub-06]
-rFFA = 7 2.6 5 6
-lFFA = 7 2.6 9
-rPPA = 8 2.4 5
-lPPA = 8 2.4 25
-rEBA = 9 2.6 1
-rLOC = 10 2.3 2
-lLOC = 10 2.3 97
+rpFFA = 11 1.6 1
 [sub-09]
-rFFA = 7 2.6 7
-lFFA = 7 2.6 13
-rPPA = 8 2.6 3
-lPPA = 8 2.6 14
-rEBA = 9 3.1 2
-lEBA = 9 3.1 13
-rLOC = 10 2.3 4
-lLOC = 10 2.3 14
-VIS = 6 2.3 3
 [sub-10]
-rFFA = 7 2.3 4
-rOFA = 7 2.3 1
-lFFA = 7 2.3 10
-lOFA = 7 2.3 8
-rPPA = 8 2.5 2
-lPPA = 8 2.5 6
-rEBA = 9 2.9 1
-lEBA = 9 2.9 4
-rLOC = 10 2.3 1
-lLOC = 10 2.3 21
-VIS = 6 2.3 2
 [sub-14]
-rFFA = 7 2.3 7
-rOFA = 7 2.3 5
-lOFA = 7 2.3 54
-rPPA = 8 3.3 4
-lPPA = 8 3.3 7
-rEBA = 9 3.1 1
-lEBA = 9 3.1 3
-rLOC = 10 2.5 1
-lLOC = 10 2.5 11
-VIS = 6 2.0 2
 [sub-15]
-rFFA = 7 2.9 5
-lFFA = 7 2.6 38
-rOFA = 7 2.9 1
-lOFA = 7 2.6 36
-rPPA = 8 2.4 1
-lPPA = 8 2.4 10
-rEBA = 9 2.9 3
-lEBA = 9 2.9 13
-rLOC = 10 2.5 3
-lLOC = 10 2.5 14
-VIS = 6 1.7 1 2
 [sub-16]
-rFFA = 7 2.3 21
-rPPA = 8 2.5 2
-lPPA = 8 2.5 14
-rEBA = 9 2.5 1
-lEBA = 9 2.5 29
-rLOC = 10 2.4 7
-lLOC = 10 2.4 73
-VIS = 6 1.8 1
 [sub-17]
-rFFA = 7 2.7 9
-rOFA = 7 2.7 1
-rPPA = 8 2.3 6
-lPPA = 8 2.3 28
-rEBA = 9 2.8 1
-lEBA = 9 2.8 15
-rLOC = 10 2.0 4
-lLOC = 10 2.6 11
-VIS = 6 1.7 1
 [sub-18]
-rEBA = 9 2.4 1
-lEBA = 9 2.4 13
 [sub-19]
-# FFA and OFA in a contiguous blob
-rFFA = 7 2.4 4
-lFFA = 7 2.4 14
-rPPA = 8 2.8 5
-lPPA = 8 2.8 18
-rEBA = 9 2.8 2
-lEBA = 9 2.6 38
-rLOC = 5 2.4 3
-lLOC = 5 2.4 15 17
-VIS = 6 2.3 2
 [sub-20]
-rFFA = 7 2.3 1
-lFFA = 7 2.3 33
-lOFA = 7 2.3 31
-rPPA = 3 2.3 2
-lPPA = 3 2.3 10
-lEBA = 9 2.2 39
-rLOC = 10 2.3 3 7 10 11
-lLOC = 10 2.3 16
-VIS = 6 1.7 1 3

+ 1 - 0
sub-01/rois/VIS_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/MJ/gx/MD5E-s1850--5433cb790592607edb070c5a19caf849.nii.gz/MD5E-s1850--5433cb790592607edb070c5a19caf849.nii.gz

+ 1 - 0
sub-01/rois/lEBA_2_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/8k/3q/MD5E-s1730--46ee6c8d83888f2c8f821a10267a57a2.nii.gz/MD5E-s1730--46ee6c8d83888f2c8f821a10267a57a2.nii.gz

+ 1 - 0
sub-01/rois/lFFA_6_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/FJ/Fw/MD5E-s1698--be84cf7d498296f2226764e87d002a6f.nii.gz/MD5E-s1698--be84cf7d498296f2226764e87d002a6f.nii.gz

+ 1 - 0
sub-01/rois/lFFA_8_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/1V/2Q/MD5E-s1697--ef44e10a647d7ec61138c7727594934a.nii.gz/MD5E-s1697--ef44e10a647d7ec61138c7727594934a.nii.gz

+ 1 - 0
sub-01/rois/lLOC_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/GF/KM/MD5E-s1830--0b664a1fc0a93db98bd5f5e4ca5e4f32.nii.gz/MD5E-s1830--0b664a1fc0a93db98bd5f5e4ca5e4f32.nii.gz

+ 1 - 0
sub-01/rois/lPPA_4_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/m0/mw/MD5E-s1707--0715337285f4beaab13bf9a7892e75f0.nii.gz/MD5E-s1707--0715337285f4beaab13bf9a7892e75f0.nii.gz

+ 1 - 0
sub-01/rois/rEBA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/gM/wv/MD5E-s1753--734552f421b9f6b4bf12cc74ccb23ab5.nii.gz/MD5E-s1753--734552f421b9f6b4bf12cc74ccb23ab5.nii.gz

+ 1 - 0
sub-01/rois/rFFA_2_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/jV/50/MD5E-s1750--3a4ae39b696a50d8c4842957a3e0d1a4.nii.gz/MD5E-s1750--3a4ae39b696a50d8c4842957a3e0d1a4.nii.gz

+ 1 - 0
sub-01/rois/rFFA_3_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Gw/xf/MD5E-s1744--6a46a6a5480f73ee7e550402cb8a4d1c.nii.gz/MD5E-s1744--6a46a6a5480f73ee7e550402cb8a4d1c.nii.gz

+ 1 - 0
sub-01/rois/rLOC_3_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/5P/Jj/MD5E-s1811--6d0bc461104ab1a6fc47704f21f64988.nii.gz/MD5E-s1811--6d0bc461104ab1a6fc47704f21f64988.nii.gz

+ 1 - 0
sub-01/rois/rPPA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/xZ/QV/MD5E-s1782--e2338a77c60d12ace6b86a0171832c30.nii.gz/MD5E-s1782--e2338a77c60d12ace6b86a0171832c30.nii.gz

+ 1 - 0
sub-02/rois/VIS_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/kf/qg/MD5E-s1856--ed1b355d363de60853e7fb1cc5be398d.nii.gz/MD5E-s1856--ed1b355d363de60853e7fb1cc5be398d.nii.gz

+ 1 - 0
sub-02/rois/lEBA_3_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Vp/QF/MD5E-s1715--5b5448c2b90d5c4106b90f79f1074275.nii.gz/MD5E-s1715--5b5448c2b90d5c4106b90f79f1074275.nii.gz

+ 1 - 0
sub-02/rois/lFFA_4_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/0m/32/MD5E-s1711--add6d7b5c81325a146e8194678c6de95.nii.gz/MD5E-s1711--add6d7b5c81325a146e8194678c6de95.nii.gz

+ 1 - 0
sub-02/rois/lLOC_2_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/QW/JQ/MD5E-s1825--f66fbcc28a329883785db904d69c57a6.nii.gz/MD5E-s1825--f66fbcc28a329883785db904d69c57a6.nii.gz

+ 1 - 0
sub-02/rois/lPPA_6_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/K2/xz/MD5E-s1708--2e44b59932408f69858e5b2b057406d4.nii.gz/MD5E-s1708--2e44b59932408f69858e5b2b057406d4.nii.gz

+ 1 - 0
sub-02/rois/rEBA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/v4/Z0/MD5E-s1747--3662968886998dda736ac7df8387d292.nii.gz/MD5E-s1747--3662968886998dda736ac7df8387d292.nii.gz

+ 1 - 0
sub-02/rois/rFFA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/VF/Vz/MD5E-s1772--b1223a9d4f845f2e45b30a03cba133da.nii.gz/MD5E-s1772--b1223a9d4f845f2e45b30a03cba133da.nii.gz

+ 1 - 0
sub-02/rois/rLOC_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/qZ/X3/MD5E-s1850--40d8224d0abc92d12a7f6a08fb101669.nii.gz/MD5E-s1850--40d8224d0abc92d12a7f6a08fb101669.nii.gz

+ 1 - 0
sub-02/rois/rPPA_3_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/x4/qx/MD5E-s1751--25c9cffac29e90eb449e54184763b5df.nii.gz/MD5E-s1751--25c9cffac29e90eb449e54184763b5df.nii.gz

+ 1 - 0
sub-03/rois/lEBA_2_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/G4/x6/MD5E-s1717--dd185701f2d6ab597a891d23a96d4529.nii.gz/MD5E-s1717--dd185701f2d6ab597a891d23a96d4529.nii.gz

+ 1 - 0
sub-03/rois/lLOC_2_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/8M/82/MD5E-s1829--8f10711452101d1005083d806c72202f.nii.gz/MD5E-s1829--8f10711452101d1005083d806c72202f.nii.gz

+ 1 - 0
sub-03/rois/lPPA_7_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/47/x8/MD5E-s1748--9f9ccbe0dd17191ef23e93cf76b4a527.nii.gz/MD5E-s1748--9f9ccbe0dd17191ef23e93cf76b4a527.nii.gz

+ 1 - 0
sub-03/rois/rEBA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/wq/jx/MD5E-s1767--b0e3d030fbd9baca38b1829f90218f73.nii.gz/MD5E-s1767--b0e3d030fbd9baca38b1829f90218f73.nii.gz

+ 1 - 0
sub-03/rois/rFFA_2.nii.gz_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/mv/w8/MD5E-s1751--33f3493c61eb7ad318fe5744e1cb1b04.nii.gz/MD5E-s1751--33f3493c61eb7ad318fe5744e1cb1b04.nii.gz

+ 1 - 0
sub-03/rois/rFFA_2.nii_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/VG/9F/MD5E-s1752--e15a987b92e19c020f4f41a55199c5a1.nii.gz/MD5E-s1752--e15a987b92e19c020f4f41a55199c5a1.nii.gz

+ 1 - 0
sub-03/rois/rLOC_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/6F/xF/MD5E-s1821--9d83eb9fa8bf76ebd87088fcbc467b66.nii.gz/MD5E-s1821--9d83eb9fa8bf76ebd87088fcbc467b66.nii.gz

+ 1 - 0
sub-03/rois/rOFA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/0x/Pm/MD5E-s1743--aba0113c363866eecf08e55173f49ec9.nii.gz/MD5E-s1743--aba0113c363866eecf08e55173f49ec9.nii.gz

+ 1 - 0
sub-03/rois/rPPA_4_mask.nii.gz

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+../../.git/annex/objects/4w/48/MD5E-s1706--ec71560bf28e8fed356521f55133fd64.nii.gz/MD5E-s1706--ec71560bf28e8fed356521f55133fd64.nii.gz

+ 1 - 0
sub-15/rois/rFFA_1_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/J9/M4/MD5E-s1790--b321a8b8409cc7e8335d325b519b884f.nii.gz/MD5E-s1790--b321a8b8409cc7e8335d325b519b884f.nii.gz

+ 0 - 0
sub-15/rois/rLOC_1_mask.nii.gz


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